BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947269
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5... 2159 0.0
AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1... 1266 0.0
> AT5G36230.1 | Symbols: | ARM repeat superfamily protein | chr5:14273384-14277026
FORWARD LENGTH=1624
Length=1624
Score = 2159 bits (1169), Expect = 0.0
Identities = 1242/1278 (97%), Gaps = 2/1278 (0%)
Strand=Plus/Plus
Query 1 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCTCTTCTTTGATCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGG 174
Query 61 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCA 234
Query 121 GTGGTCCAGATTTACC-TGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 179
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTGGTCCAGATTTACCATG-ATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGA 293
Query 180 GTCATCAGATCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGG 239
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 GTCATCAGACCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGG 353
Query 240 AGGACGCACACAAGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGT 299
||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 354 AGGACGCACACAACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGT 413
Query 300 AATTGACTGTGAACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAAT 359
|||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 414 AATTGATTGTGAACCCAAGCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAAT 473
Query 360 TCTGCGGAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCA 419
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 TCTGCGTAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCA 533
Query 420 GTCACTGGAGCTTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 534 GTCACTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGC 593
Query 480 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 CTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGA 653
Query 540 TAATCTTGTTGCCAAAGGGATAGTGCTCTCATTCGTAACAGACTTCTTCAAGGAGTATTT 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 TAATCTTGTTGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTT 713
Query 600 GGTTGAGAACAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAA 659
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 714 GGTTGAGAACAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAA 773
Query 660 CCTTATGGATTTCCTACCACCTGTTAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 719
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 774 CCTTATGGATTTCCTACCACCAGTAAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCAC 833
Query 720 GAATGAGGGATTGACCGATCTAGTAGAATACCATTCAAAGAAAATGTTTGAGGTGAAACT 779
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 GAATGAAGGATTGACTGATCTAGTAGAGTACCATTCAAAGAAAATGTTTGAGGTGAAACT 893
Query 780 AAAGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTCGACGAAGT 839
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 GAGGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTAGACGAAGT 953
Query 840 CATTGAATCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCG 899
|||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||
Sbjct 954 CATTGAATCGGTGAAGCAACAGATCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCG 1013
Query 900 TGTCGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAA 1073
Query 960 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 TGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTGTAC 1133
Query 1020 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGC 1193
Query 1080 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTCGC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1194 AAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGC 1253
Query 1140 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACAAACTCAAAGGGCAGGCAAACCTT 1199
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1254 TGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGGCAAACCTT 1313
Query 1200 TGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1259
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGAGT 1373
Query 1260 GATCTATGTTCCTAATAA 1277
|||||||||| |||||||
Sbjct 1374 GATCTATGTTTCTAATAA 1391
> AT1G65220.1 | Symbols: | ARM repeat superfamily protein | chr1:24226111-24228970
FORWARD LENGTH=1500
Length=1500
Score = 1266 bits (685), Expect = 0.0
Identities = 1077/1265 (85%), Gaps = 32/1265 (3%)
Strand=Plus/Plus
Query 13 TCTTGGTTTATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGC 72
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 85 TCTTGGTTTATGAGCTCAAAGGAGAAGCCCACTCTCGGAGGTACGCGGATTAAGACCCGC 144
Query 73 AAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATT 132
||| ||||||||||||||||||| |||||||| || |||||||||||| | || ||||||
Sbjct 145 AAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATT 204
Query 133 TACCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATT-GAGTCATCAGATCT 191
|| |||||||||||||||||||||||||||||||||| |||| || |||||||| |||||
Sbjct 205 TATCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAGAAGT-TTAGAGTCATCTGATCT 263
Query 192 TAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTGTTTTCATAGGAGGACGCACACA 251
||||||| ||||||| ||||| || |||||||||||||||||||| |||||||| || ||
Sbjct 264 TAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACTCA 323
Query 252 AGCTGGAACAGTGAAATCTGATGAAGGGGAACGCCATACGTACTCTGTAATTGACTGTGA 311
| |||| |||||||||||||||||||||||||||| | |||||| |||| ||||||||
Sbjct 324 AACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTGA 383
Query 312 ACCCAGGCGTGAAGCCATTTTGCCGTCTGTTGTCTACATACAGAAAATTCTGCGGAGGAA 371
||| | ||||||||| ||||| || || ||||| ||||||||||||||| ||||||||||
Sbjct 384 ACCAAAGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGGAA 443
Query 372 -GCCTTTCCTCATAAAGAACCTTGAAAATGTTACCCGGAGATTCCTGCAGTCACTGGAGC 430
||||| ||| || ||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 444 AGCCTT-CCTTATTAAGAACCTTGAGAATGTTACACGGAGATTCTTACAGTCACTGGAGC 502
Query 431 TTTTTGAGGAAAACGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCAGA 490
|||||||||| || || |||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 503 TTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCACTTGCATTTTCACAGA 562
Query 491 AGCTCTCAGGATTACCTCCGGAAACTGTTTTCCAGCCATTGCTCAAGGATAATCTTGTTG 550
||||||||||||||||| | || ||||| |||||||||||||| ||||||| ||||||||
Sbjct 563 AGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATACTCTTGTTG 622
Query 551 CCAAAGGGATAGTGCTCTCA-TTC-GTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAA 608
||||||||||||| ||||| || ||||||||||||||||| || ||||||||||||||
Sbjct 623 CCAAAGGGATAGT--TCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAA 680
Query 609 CAGTCTTGAAGACTTGATCTCTATTCTGAGGCGTGGAAAAATGGAAGACAACCT-TATGG 667
||||||||| |||||||| ||||||||||||||||| || ||||| ||||| || | |||
Sbjct 681 CAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCT-TGG 739
Query 668 ATTTCCTACCACCTGTTAGGCG-ATCTGCTGAAAGTTTTGCGGAACATTTCACGAATG-A 725
| ||||| ||||| | ||| | || | ||||||||||| || |||||||| || | |
Sbjct 740 AGTTCCTGCCACCCACAAAGCGGA-CTACAGAAAGTTTTGCCGAGCATTTCACTAAGGCA 798
Query 726 GGGATTGACCGATCTAGTAGAATACCATTCAAAG-AAAATGTTTGAGGTGAAACTAAAGG 784
|| |||||| | ||| ||||| ||| || |||| ||||| ||||||||||| || ||||
Sbjct 799 GG-ATTGACAGCTCTGGTAGAGTACAATG-AAAGGAAAATATTTGAGGTGAAGCTGAAGG 856
Query 785 AAATCAAAACCGTTCTTACAAGC-AAGGTCACAGAGGAAAGTAAT-GTCGACGAAGTCAT 842
|||||||| | || ||||| ||| ||| | |||||||||| ||| || || ||||| |
Sbjct 857 AAATCAAAGCGGTCCTTACGAGCCAAG-TGACAGAGGAAA-TAAACGTAGATGAAGTGAC 914
Query 843 TGAA-TCGGTGAAGCAACAGATCAAAGAAGCTAAGATGCCTGACATTGAAGTTGTGCGTG 901
|||| | ||||||||||||| | ||||| || ||| |||| || | ||| ||||||| ||
Sbjct 915 TGAAAT-GGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCAGAGACTGAGGTTGTGCATG 973
Query 902 TCGTT-TGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAAT 960
| | | |||||||| ||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct 974 T-GATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAGAAT 1032
Query 961 GCAAATTCTGT-TCTGCGCCAGGTGAAAACATGGGCTCCGCTTCTGAACACGTTCTGTAC 1019
| ||| |||| | | ||||| |||||||||||||| || |||||||||||| | ||||
Sbjct 1033 TCGAATGCTGTAT-TACGCCAAGTGAAAACATGGGCACCCCTTCTGAACACGCTGTGTAG 1091
Query 1020 CAGCGGAAAGC-TAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATG 1078
|| ||| || | | ||| ||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1092 CACCGGGAA-CATGGAGATGGAACTGATGTATAAAGTACAGATGCAATGCTATGAGGATG 1150
Query 1079 CAAAGCTTATGAAAGT-TTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTACTC 1137
||||||| |||||||| ||||| || |||||||| || || |||||||| ||||| ||
Sbjct 1151 CAAAGCTGATGAAAGTGTTTCCT-GAGGTAGTGAGATCTCTGTATGAACTGGATGTGCTT 1209
Query 1138 GCTGAAGACACCATTCTCCACTGGT-TCCGTAAAGGAACAAACTCAAAGGGCAGGCAAAC 1196
|| |||||||||||||| ||||||| || | ||||| || ||| | ||||||||||||||
Sbjct 1210 GCGGAAGACACCATTCTGCACTGGTATC-GCAAAGGGACCAACCCTAAGGGCAGGCAAAC 1268
Query 1197 CTTTGTGAAAAGCTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTG 1256
|||||||| | || || || |||||||||||||| |||||||| || ||||| |||||
Sbjct 1269 GTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGCCGAAGAAGAGGAGTG 1328
Query 1257 AGTGA 1261
|||||
Sbjct 1329 AGTGA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5