BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947274
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36270.1 | Symbols: | pseudogene of dehydroascorbate reduct... 937 0.0
> AT5G36270.1 | Symbols: | pseudogene of dehydroascorbate reductase
| chr5:14292931-14293584 FORWARD LENGTH=654
Length=654
Score = 937 bits (507), Expect = 0.0
Identities = 606/655 (93%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 25 ATGGGGATTGAAGTCTGCGTGAAGGCCGCTTCAGGTGCACCTGATGTTCTTGGTGATTGC 84
||||| || |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1 ATGGGCATCGAAGTCTGCGTGAAGGCCGCATCAGGTGCACCTGATGTTCTCGGTGACTGC 60
Query 85 CCTTTTAGTCAAAAGATTCTTCTCACTCTCGAGGAGAAGAAGCTTCCTTACAAAACTCAT 144
||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 CCTTTCGGTCAAAGGATACTTCTCACTCTCGAGGATAAGAAACTTCCTTACAAAACTCAT 120
Query 145 CTCATTGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 204
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCATCGACGTTTCTCTCAAACCGGATTGGTTCTTGGCTATTAGTCCCAAGGGAAAACTT 180
Query 205 CCATTGATGAAGTTCGACGACA-ATGACGAGTGGGTGGCTGATTCTGATCTCATAGTGGG 263
|||||| |||||||||| || | | || | |||||||||||||| || || ||||||||
Sbjct 181 CCATTGGTGAAGTTCGATGA-AGACGAAAATTGGGTGGCTGATTCCGACCTTATAGTGGG 239
Query 264 AATCATCGAGGAGAAATATCCGGACCCTTCCCTCGTGACGTTTCCTCCTGAATATGCCTC 323
|||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||| ||
Sbjct 240 AATCATCGAGGAGAAATATCCGGAGCCTTCTCTCGTGACGTTTCCTCCTGAGTTTGCATC 299
Query 324 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCGAA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TGTGGGCTCCAAGATCATTGGTGCTTTTGTGATGTTTTTGACGAGCAAAGATCATGCCAA 359
Query 384 TGATGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTGGACCATCACCTCAGGAC 443
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 360 TGACGGGTCCGACATGGCTTTGTTGGATGAACTTGAGGCGTTAGACCATCACCTCAAGAC 419
Query 444 TCACGTTGGTCCTTTTGTGGCTGGCGATAAAGTCACGGCCGTGGATTTGAGCCTAGCGCC 503
||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||| ||
Sbjct 420 TCACGTTGGTCCTTTCGTGGCGGGAGATAAAGTAACGGTCGTGGATTTGAGCCTAGCACC 479
Query 504 AAAGCTTTACCATCTAGAGACTACCTTAGGACATTTCAAGGATTGGTATGTCCCTGAGAG 563
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 480 AAAGCTTTACCATCTAGAGACTACGTTAGGACATTTCATGGATTGGTGTGTCCCTGAGAG 539
Query 564 TCTAACCAATGTTCGAAATTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 623
|||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTAACTAATGTCCGTGACTACATGAAGGTGTTGTTCTCTCTTGAGTCTTTTGAGAAAAC 599
Query 624 TAAGGCTGCCAAAGAATATGTGATTGCGGGTTGGGCTCCTAAGCTCGACGTGTGA 678
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 600 TAAGGCTGCCAAAGAATATCTGATTGCAAGTTGGGCTCCTAAGCTCGACGTGTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5