BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947275
Length=425
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65290.1 | Symbols: mtACP2 | mitochondrial acyl carrier prot... 333 8e-91
AT5G36280.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 250 8e-66
> AT1G65290.1 | Symbols: mtACP2 | mitochondrial acyl carrier protein
2 | chr1:24248828-24250421 REVERSE LENGTH=696
Length=696
Score = 333 bits (180), Expect = 8e-91
Identities = 325/394 (82%), Gaps = 13/394 (3%)
Strand=Plus/Plus
Query 16 CAGCAATGGCGGCGAGAGGTGCTCTGCTTAAATACCTTAGAGTCAATGTCACA-CCTTCT 74
||||||||||||||||||||||| ||||| |||||| |||||||| |||| | || |
Sbjct 51 CAGCAATGGCGGCGAGAGGTGCTATGCTTCGATACCTGAGAGTCAACGTCA-ATCCAACA 109
Query 75 CTTCAAATCTCAAGCAGTATCACT-TCCCCTCCTTTATACGTTCTTATCCGTCGTTTCTC 133
|||||| | | || || || | | | |||||| | | |||| | |||||||||||
Sbjct 110 ATTCAAAACCCTAG-AGAAT--GTGT-ACTTCCTTTCTCCATTCTCCTTCGTCGTTTCTC 165
Query 134 TGAAGAAGTGAGAGGATCATTCCTCGACAAATCCGAAGTCACAGATCGCGTTCTCTCTGT 193
|| ||||| ||||| || ||||| |||||||| || ||||||||||| |||||||||||
Sbjct 166 CGAGGAAGTTAGAGGCTCTTTCCTTGACAAATCTGAGGTCACAGATCGAGTTCTCTCTGT 225
Query 194 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTGACACCAAAGGCGCA-TTTC-AAC 251
|||||||||||||||||||||||||||||||||||| |||||||| || || |||| ||
Sbjct 226 CGTCAAAAACTTCCAAAAAGTTGATCCTTCTAAGGTAACACCAAAAGC-CAATTTCCAA- 283
Query 252 AATGATCTAGGTTTGGATAGTTTGGACACTGTGGAGGTGGTTATGGCATTGGAAGAGGAG 311
||||||||||| ||||| |||||||||| |||||| || || ||||||||||| |||||
Sbjct 284 AATGATCTAGGGTTGGACAGTTTGGACAGTGTGGAAGTTGTGATGGCATTGGAGGAGGAA 343
Query 312 TTTGGATTTGAAATACCTGATAACGAAGCTGATAAGATACAGTCGATCGATCTCGCTGTT 371
||||| ||||| || |||||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 344 TTTGGGTTTGAGATCCCTGATAATGAAGCAGACAAGATCCAGTCCATCGATCTAGCCGTT 403
Query 372 GA-TTTCATTGCGTCACACCCGCAGGCAAAGTGA 404
|| ||| ||||| || || || ||||| ||||||
Sbjct 404 GACTTT-ATTGCTTCTCATCCTCAGGCTAAGTGA 436
> AT5G36280.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: mitochondrial acyl carrier protein 2 (TAIR:AT1G65290.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:14299235-14299462 REVERSE LENGTH=228
Length=228
Score = 250 bits (135), Expect = 8e-66
Identities = 183/206 (89%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGCGAGAGGTGCTCTGCTTAAATACCTTAGAGTCAATGTCACACCTTCTCTTCAA 80
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGAGAGGTGCTCTGCTTAAATATCTCATTGTCAATGTCACACCTTCTCTTCAA 60
Query 81 ATCTCAAGCAGTATCACTTCCCCTCCTTTATACGTTCTTATCCGTCGTTTCTCTGAAGAA 140
||||||||| ||||||||||||||||||| || |||||| | || ||||||||| |||||
Sbjct 61 ATCTCAAGCCGTATCACTTCCCCTCCTTTGTATGTTCTTCTTCGGCGTTTCTCTAAAGAA 120
Query 141 GTGAGAGGATCATTCCTCGACAAATCCGAAGTCACAGATCGCGTTCTCTCTGTCGTCAAA 200
|| |||| |||||||| ||| ||| ||||||||| ||||| |||||||| ||||||||
Sbjct 121 GTTAGAG---CATTCCTCTACACATCTGAAGTCACATATCGCTTTCTCTCTATCGTCAAA 177
Query 201 AACTTCCAAAAAGTTGATCCTTCTAA 226
|||||||||||| |||| ||||||||
Sbjct 178 AACTTCCAAAAATTTGAGCCTTCTAA 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20157367349
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5