BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947277

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61530.1 | Symbols:  | small G protein family protein / RhoG...   726    0.0  


> AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP 
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569

 Score =  726 bits (393),  Expect = 0.0
 Identities = 448/475 (94%), Gaps = 2/475 (0%)
 Strand=Plus/Plus

Query  156  GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  215
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  494

Query  216  GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA  275
            ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  495  GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA  554

Query  276  AATGGAAGAGGCAACCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA  335
            | ||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  555  AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA  614

Query  336  AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGT  395
            ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  615  AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT  674

Query  396  CCAGCGGCAAGAGTCAAACAGGCCTATACCACTGATACT-GATTAAATGCGCATATTATC  454
            ||||||||| ||||||| ||||||||| || |||||||| | ||||||||||| ||||||
Sbjct  675  CCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACTAG-TTAAATGCGCAGATTATC  733

Query  455  TCATATTAACAGGGCTTAATTCATCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGA  514
            ||||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct  734  TCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGA  793

Query  515  TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGGTGTGA  574
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  794  TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGA  853

Query  575  ATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC  629
            ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct  854  ATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC  908



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32149854080


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5