BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947280
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family p... 250 1e-65
> AT3G42550.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:14665728-14669135 REVERSE LENGTH=1293
Length=1293
Score = 250 bits (135), Expect = 1e-65
Identities = 194/222 (87%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 297 TTCATCACAG-GCTTTACTACACGACATTACAAATTAGGAAACCGCCAAGAGAGTTCAAT 355
||| || ||| |||||||||||| ||| |||||||| ||| ||| ||||||||||| ||
Sbjct 218 TTC-TCTCAGCGCTTTACTACACAACAGTACAAATTGGGACACCTCCAAGAGAGTTGGAT 276
Query 356 GTGGTAATTGACACGGGAAGTAATGTTTTATGGGTTAGCTGCATTTCATGCGTCGGTTGC 415
||||||||||||||||||||| || || ||||||||||||||| ||| |||||||| |||
Sbjct 277 GTGGTAATTGACACGGGAAGTGATCTTGTATGGGTTAGCTGCAATTCCTGCGTCGGCTGC 336
Query 416 CCTCTTCAGAATGTTACTTTCTTCGATCCTGGAGCCTCATCAGCAGCTGTAAAGCTTGCA 475
|| || || |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 337 CCGCTCCATAATGTTACTTTCTTCGATCCTGGAGCCTCATCCTCAGCTGTAAAGCTGGCA 396
Query 476 TGTTCTGACAAGAGGTTCTTC-TCGGATCTATTA-AAGAAAT 515
|||||||||||||||| ||| ||||||||| | |||||||
Sbjct 397 TGTTCTGACAAGAGGTG-TTCCTCGGATCTAC-AGAAGAAAT 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5