BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947283

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   381    2e-105
  AT3G42560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   222    1e-57 


> AT5G36300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr5:14320668-14322426 FORWARD LENGTH=883
Length=883

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 293/330 (89%), Gaps = 26/330 (8%)
 Strand=Plus/Plus

Query  1    AGACAGTAAAGGTGCTCAAGATGATGGAGAACGAGGGGATTGAACCAAACTTGATTATGT  60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct  545  AGACAGTAAAGGTGCTCAAGATGATGGAGAATGAGGGGATTGAACCAAACTTGATTATGC  604

Query  61   TGAATGTTTTGATTAATGCTTTTGGAACTGTTGGGAAGCACATGGAAGCTCTATCTATTT  120
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  605  TGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATCTATTT  664

Query  121  ATCACCATATTAAAGAAA--G--CGGATTCACCCCCGATGTGGTTACCTATAGTACACTT  176
            |||| |||||||||||||  |   ||||||| ||||||||||||||||||||||||||||
Sbjct  665  ATCATCATATTAAAGAAACCGTATGGATTCA-CCCCGATGTGGTTACCTATAGTACACTT  723

Query  177  ATGAAAGCATTCACTCGAGCAAAGAAGTATGAAA----A-G-----G---------G--A  215
            ||||||||||||||||||||||||||||||||||    | |     |         |  |
Sbjct  724  ATGAAAGCATTCACTCGAGCAAAGAAGTATGAAATGGTATGTTCCAGAAATATTCAGGGA  783

Query  216  AATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACTATTGCAAAATGCTTT  275
            ||||||||| |||||||||||  ||||||||||||||| |||| |||||||||||||| |
Sbjct  784  AATGGAAGCTTCTGGGTGTACAACAGATCGGAAAGCAAAACAATTATTGCAAAATGCTAT  843

Query  276  TATGGTTCTTGATAAAAGACATTAAGTATT  305
            ||||||||||||||||||||||||||||||
Sbjct  844  TATGGTTCTTGATAAAAGACATTAAGTATT  873


> AT3G42560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr3:14680265-14680760 FORWARD LENGTH=297
Length=297

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 138/147 (94%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  141  GGATTCACCCCCGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGAGCAAAG  200
            |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  151  GGATACACCCCTGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGACCAAAG  210

Query  201  AAGTATGAAAAGGGAAATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACT  260
            |||||||||||||||||||||||| | ||||||||| | ||||| |||||||||||| ||
Sbjct  211  AAGTATGAAAAGGGAAATGGAAGCTTTTGGGTGTACGGTAGATCAGAAAGCAAGACAGCT  270

Query  261  ATTGCAAAATGCTTTTATGGTTCTTGA  287
            |||||||||||||||||||||||||||
Sbjct  271  ATTGCAAAATGCTTTTATGGTTCTTGA  297


 Score =  167 bits (90),  Expect = 6e-41
 Identities = 107/115 (93%), Gaps = 1/115 (1%)
 Strand=Plus/Plus

Query  24   ATGGAGAACGAGGGGATTGAACCAAACTTGATTATGTTGAATGTTTTGATTAATGCTTTT  83
            |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||
Sbjct  1    ATGGAGAATGAGGGGATTGAACCAAACTTGATTATGTCGAATGTTTTGGTTAATGCATTT  60

Query  84   GGAACTGTTGGGAAGCACATGGAAGCTCTATCTATTTATCACCATATTAAAGAAA  138
            ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct  61   GGAACTGCTGG-AAGCACATGGAAGCTCTCTCTATTTATCATCATATTAAAGAAA  114



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5