BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947287

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36680.1 | Symbols:  | Protein of Unknown Function (DUF239) ...   566    1e-160
  AT5G36770.1 | Symbols:  | Protein of Unknown Function (DUF239) ...   566    1e-160


> AT5G36680.1 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr5:14406802-14409137 REVERSE LENGTH=1002
Length=1002

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 349/370 (94%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  187  AGATGAAACCAACCGGATGGGATTCTCAATCAGAGAATAAATTCGCAGACAGAAAACACA  246
            ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct  80   AGATGAAACCAACAGGATGGGATTCTCAATCAGAGAATAAATTTGCAGAAAGAAGACACA  139

Query  247  AAAACAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAACTAAGAAAAAACATG  306
            | || ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct  140  ACAATAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAGCCAAGGAAAAACATG  199

Query  307  TCATACAATCTCAAGGATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCAG  366
            ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  200  TCATACAATATCAAGAATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCGG  259

Query  367  GTACCCATATTGCGGGAATG-AAGATAGTAGGAAAACATAATTACAGAGGCGTAGAAGCA  425
            |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct  260  GTACCCATATTGCGGGAATGAAAG-TAGTAGAAAAACATAATTACAGAGGCGTAGAAGCA  318

Query  426  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  378

Query  486  GTAGCCACTGCCTCCAATGATGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  545
            |||||||  || | || || ||||||||||||||||||||||||||||||||||||||||
Sbjct  379  GTAGCCAGAGCATTCAGTGGTGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  438

Query  546  CAACTATTTG  555
            ||||||||||
Sbjct  439  CAACTATTTG  448


 Score =  124 bits (67),  Expect = 9e-28
 Identities = 79/85 (93%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  21   ATGGATATTTTTGTGAGTTTTGTTGTGTTTATAGTTTCAATGTTATCTGTCGAATCTACT  80
            |||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||||||
Sbjct  1    ATGGATATCTTTGTGAGTTTTGTTGTGTTTATCCTTTCAGTGTTATCTGTTGAATCTACT  60

Query  81   ATACATATGAAATCCATCAAGTTGA  105
            ||||||||||||||||||||| |||
Sbjct  61   ATACATATGAAATCCATCAAGATGA  85


> AT5G36770.1 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr5:14466102-14468486 REVERSE LENGTH=1051
Length=1051

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 349/370 (94%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  187  AGATGAAACCAACCGGATGGGATTCTCAATCAGAGAATAAATTCGCAGACAGAAAACACA  246
            ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct  129  AGATGAAACCAACAGGATGGGATTCTCAATCAGAGAATAAATTTGCAGAAAGAAGACACA  188

Query  247  AAAACAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAACTAAGAAAAAACATG  306
            | || ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct  189  ACAATAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAGCCAAGGAAAAACATG  248

Query  307  TCATACAATCTCAAGGATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCAG  366
            ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  249  TCATACAATATCAAGAATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCGG  308

Query  367  GTACCCATATTGCGGGAATG-AAGATAGTAGGAAAACATAATTACAGAGGCGTAGAAGCA  425
            |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct  309  GTACCCATATTGCGGGAATGAAAG-TAGTAGAAAAACATAATTACAGAGGCGTAGAAGCA  367

Query  426  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  GGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTAT  427

Query  486  GTAGCCACTGCCTCCAATGATGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  545
            |||||||  || | || || ||||||||||||||||||||||||||||||||||||||||
Sbjct  428  GTAGCCAGAGCATTCAGTGGTGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAA  487

Query  546  CAACTATTTG  555
            ||||||||||
Sbjct  488  CAACTATTTG  497


 Score =  147 bits (79),  Expect = 2e-34
 Identities = 94/101 (93%), Gaps = 1/101 (1%)
 Strand=Plus/Plus

Query  5    TTACATTGTGATTTCAATGGATATTTTTGTGAGTTTTGTTGTGTTTATAGTTTCAATGTT  64
            ||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| ||||
Sbjct  35   TTACATTGTGA-TTCAATGGATATCTTTGTGAGTTTTGTTGTGTTTATCCTTTCAGTGTT  93

Query  65   ATCTGTCGAATCTACTATACATATGAAATCCATCAAGTTGA  105
            |||||| |||||||||||||||||||||||||||||| |||
Sbjct  94   ATCTGTTGAATCTACTATACATATGAAATCCATCAAGATGA  134



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32752663844


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5