BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947314
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3... 2689 0.0
AT1G58030.1 | Symbols: CAT2 | cationic amino acid transporter 2... 1133 0.0
> AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter
3 | chr5:14590166-14594384 FORWARD LENGTH=2241
Length=2241
Score = 2689 bits (1456), Expect = 0.0
Identities = 1769/1914 (92%), Gaps = 46/1914 (2%)
Strand=Plus/Plus
Query 1 TTGTCGTTTTAATGGGTTTTATGGTGAATACGCAAAACGAAGAT-G-G-TAGTGGTAACC 57
|||| |||| ||||||||||||||||||| ||||||| |||| | | | | ||||| |||
Sbjct 101 TTGTTGTTTAAATGGGTTTTATGGTGAATTCGCAAAATGAAGGTGGTGTTGGTGGTGACC 160
Query 58 ATTCATGGGGTTGCTTAAGAAATTTAGTAAGAAGGAAACAAGTCGACTCTTCAAATGGCA 117
|||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 161 ATTCAT-GGGTTGTTTAAGAAGCTTAGTAAGAAGGAAACAATTCGACTCTTCAAATGGCA 219
Query 118 AAACAGAGA--C-TCATCATCACCAACAACTCGCAAAAGCTTTGACCTTTCCTCACTTGA 174
|| |||||| | ||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 220 AAGCAGAGACTCATCATCATCACCAACAGCTTGCAAAAGCGTTGACCTTTCCTCACTTGA 279
Query 175 TTGCCGTTGGTGTTGGATCAACAATAGGAGCAGGGGTTTATATTCTTGTGGGAACAGTGG 234
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 280 TTGCCATTGGTGTTGGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAACAGTAG 339
Query 235 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTTTCCTTCCTTATAGCTGGAATTTCTGCTG 294
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 340 CTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTTATAGCTGGAATTTCTGCTG 399
Query 295 CGCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCTTCAGCTGGGAGTGCCT 354
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 400 CCCTTTCTGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCCTCTGCTGGGAGTGCCT 459
Query 355 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGTGCTGA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 460 ATCATTATTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGCGCTGA 519
Query 415 TTTTGGAATACACAATTGGTGGTTCAACAGTAGCTCGTGGCATATCTCCAAATCTGGCAA 474
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 520 TTTTGGAATACACAATTGGTGGTTCAACAGTTGCCCGCGGCATATCTCCAAATCTGGCAA 579
Query 475 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGATTTTCGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCC 639
Query 535 TCGATATTGTTGTTGACCCATGTGCGGCTGTACTAGTGTTCATTGTAACAGGGCTCTTG- 593
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||
Sbjct 640 TTGATATTGTTGTTGACCCGTGTGCTGCTGTGCTAGTGTTCATTGTAACAGGACT-TTGT 698
Query 594 TGCCTTGGAGTAAAAGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 653
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGCCTTGGAGTAAAGGAGAGCACATTTGCTCAGGGAATTGTAACAACAGCAAATGTCTTT 758
Query 654 GTCATGCTATTTGTCATAGTAGTTGGTAGTTATCTGTGTTTCAAGACTGGCTGGGTAGGT 713
|||||| ||||||||||||||| ||| || ||| ||||||||||||| || ||||| |||
Sbjct 759 GTCATGATATTTGTCATAGTAGCTGGAAGCTATTTGTGTTTCAAGACAGGTTGGGTTGGT 818
Query 714 TATGAACTTCCAACGGGGTATTTTCCGTATGGGGTTGATGGAATGCTTACTGGATCTGCT 773
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 819 TATGAACTTCCAACGGGGTATTTTCCTTACGGGGTTGATGGAATGCTTACTGGATCTGCT 878
Query 774 ACTGTCTTCTTTGCGTACATCGGGTTTGATTCAGTTTCAAGTATGGCAGAGGAGGTGAAA 833
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 879 ACTGTCTTCTTTGCCTACATCGGGTTTGATACAGTTGCAAGTATGGCAGAGGAGGTGAAA 938
Query 834 AATCCCCAGCGGGATTTACCGCTCGGTATTGGTCTTTCGCTCATGCTTTGTTGTTTGCTA 893
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 939 AATCCCCGGCGGGATTTACCGCTCGGTATTGGGATTTCGCTCCTGCTTTGTTGTTTGCTG 998
Query 894 TACATGATGGTCTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 953
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TACATGATGGTGTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGACCCTGAC 1058
Query 954 ACTCCAATATCCTCTGCATTTGCTAGTCACGGAATTCAATGGGCCGCATATTTGATAACT 1013
||||||||||| || |||||| ||||||| |||||||||||||| ||||||||||||| |
Sbjct 1059 ACTCCAATATCATCCGCATTTTCTAGTCATGGAATTCAATGGGCTGCATATTTGATAAAT 1118
Query 1014 TTAGGTGCTGTCATGGCTCTCTGTTCTGTTTTAATGGGCTCCATTCTCCCTCAGCCGCGG 1073
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1119 TTAGGTGCTGTCATGGCTCTCTGTTCTGCATTAATGGGCTCCATTCTCCCTCAGCCGCGG 1178
Query 1074 ATTCTGATGGCAATGGCTAAGGATGGTCTCTTGCCTTCATTTTTCTCAAATGTGAATCAA 1133
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1179 ATTCTGATGGCAATGGCTAGGGATGGTCTCTTGCCTTCATATTTCTCATATGTGAATCAA 1238
Query 1134 CGCACGCAGGTTCCTGTTAATGGCACCATAACAACTGGTGTTTGTGTAGCAATCTTAGCT 1193
|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1239 CGCACGCAGGTTCCAATTAATGGCACCATAACCACTGGTGTTTGTGCAGCAATCTTAGCT 1298
Query 1194 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TTCTTTATGGATGTTTCGCAACTGGCGGGAATGGTGAGTGTCGGGACACTTGTTGCATTT 1358
Query 1254 ACAATGGTTGCAATATCA--G-TG-T--T--GATA----G----T-C--A-GA--TA--T 1289
|||||||||||||||||| | || | | |||| | | | | || || |
Sbjct 1359 ACAATGGTTGCAATATCATTGTTGATAGTCAGATATGTTGTTCCTCCAGATGAGGTACCT 1418
Query 1290 GTT-CCTC--CAGAT-GAGAAAACTCATCCAGTCACGT-----CTTCCAGT-AGTAGTAA 1339
|| |||| || | ||||||||||||||||||||| |||||| | |||||||
Sbjct 1419 CTTCCCTCATCACTTCAAGAAAACTCATCCAGTCACGTCGGAACTTCCA-TCCGTAGTAA 1477
Query 1340 ACAACCTTTACTTTGCAAAGCT-GATGCTTCAATTGTGGATAAGGAAAAAGCTCAAGGAG 1398
||||||||||||| |||||| | |||| |||| |||| ||||||||||| |||| ||||
Sbjct 1478 ACAACCTTTACTTGGCAAAG-TGGATGATTCAGTTGTCGATAAGGAAAATGCTCCAGGAA 1536
Query 1399 GTTGGGTTCTCAACAAAGAAAACAGAAGGAAACTTGCTGGTTGGAGCATTATGTTCACTT 1458
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1537 GTTGGGTTCTCAACAAAAAAAACAGACGGAAATTTGCTGGTTGGAGCATTATGTTCACTT 1596
Query 1459 GTACTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTAC 1518
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1597 GTATTGGAAACTTCCTTTTAAGCTATGCAGCGTCAAGCTTCCTCTTGCCAGGACTCCTCC 1656
Query 1519 GATACTCGCTATGTGGTGTTGGTGGATTGTTACTTCTTGTCGGTTTGATTGTTCTGAGTT 1578
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1657 GATATTCTCTATGTGGTGTTGGTGGATTGTTCCTTCTTGTCGGTTTGATTGTTCTGATTT 1716
Query 1579 GCATAGATCAAGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1638
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 GCATAGATCAGGATGATGCTAGACACAGTTTTGGGCATTCTGGAGGCTTCATTTGCCCGT 1776
Query 1639 TTGTTCCGCTTTTGCCTATAGTCTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1698
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTGTTCCGCTTTTGCCTATAGTTTGCATTCTTATCAACATGTATCTCTTGGTAAACCTTG 1836
Query 1699 GAGCTGCGACATGGGCTCGTGTATCGGTTTGGCTGTTCATTGGAGTGCTTGTTTACATTT 1758
|||||||||| |||| |||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 1837 GAGCTGCGACGTGGGTTCGTGTATCGGTTTGGCTGTTCCTCGGAGTGGTTGTTTACATTT 1896
Query 1759 TCTATGGCCGAAGAAACAGCTCTCTTGTGAATGCAGTTTATGTCTCCACTGCTCATGTCC 1818
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1897 TCTATGGGAGAAGAAACAGCTCTCTTGTGAATGCTGTTTATGTCTCCACTGCTCATCTCC 1956
Query 1819 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAACTCTACATGAAACCAT 1872
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1957 AGGAGATTCGTCGCACTTCTGGACATTCTTTGGCTTAAGTCTACATGAAACCAT 2010
> AT1G58030.1 | Symbols: CAT2 | cationic amino acid transporter
2 | chr1:21464001-21468420 REVERSE LENGTH=2371
Length=2371
Score = 1133 bits (613), Expect = 0.0
Identities = 1112/1345 (83%), Gaps = 66/1345 (5%)
Strand=Plus/Plus
Query 8 TTTAAT-GGGTTTTATGGTGAATACGCAAAACGAAGATGGTA-GTGGTAACCATTCATGG 65
||| || ||||||| ||||| |||||||||| | || || | |||| | |||||||||
Sbjct 276 TTTGATGGGGTTTT-TGGTGGATACGCAAAA-G--GAAGG-AGGTGG--A-CATTCATGG 327
Query 66 GGTTGC-TTAAGAAATTTAGTAAGAAGGAAACAAGTCGACTCTTCAAATGGCAAAACAGA 124
|||| | || |||| ||| || ||||||||||||||||||||| | |||||| || |
Sbjct 328 GGTTACGTT-AGAAGTTTGGTTAGAAGGAAACAAGTCGACTCTGCTAATGGC----CA-A 381
Query 125 GACTCATCATCACCAACAACTCGCAAAAGCTTTGACCT-TTCCTCA-CTTGATTGCCGTT 182
||||| ||| | ||||| || | ||| | | || ||||||| || | |||| ||
Sbjct 382 -TCTCATGGTCA-C--CAACTTGCTAGAGCCCTCA-CTGTTCCTCATCTCG-TTGCAATT 435
Query 183 GGTGTTGGATCAACAATAGGAGCAGGGGTTTATATTCTTGTGGGAACAGTGGCTAGAGAG 242
||||||||| ||||||||||||| || |||||||||||||| |||||||| || ||||||
Sbjct 436 GGTGTTGGAGCAACAATAGGAGCTGGAGTTTATATTCTTGTAGGAACAGTTGCGAGAGAG 495
Query 243 CATTCAGGACCTGCTCTTGCTTTTTCCTTCCTTATAGCTGGAATTTCTGCTGCG-CTTTC 301
|||||||||||| |||||||||| || || ||||| ||||||||| |||||| | |||||
Sbjct 496 CATTCAGGACCTTCTCTTGCTTTGTCTTTTCTTATTGCTGGAATTGCTGCTG-GTCTTTC 554
Query 302 TGCGTTTTGTTATGCGGAACTATCTAGTCGTTTTCCTTCAGCTGGGAGTGCCTATCATTA 361
||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||| ||
Sbjct 555 TGCGTTTTGTTATGCTGAACTCTCTAGTCGTTGCCCTTCAGCTGGGAGTGCGTATCACTA 614
Query 362 TTCTTACATTTGCATTGGTGAAGGTGTTGCGTGGTTGATTGGCTGGGTGCTGATTTTGGA 421
|||||||||||| |||||||||||||||||||| | || || |||| | ||||| ||||
Sbjct 615 TTCTTACATTTGTGTTGGTGAAGGTGTTGCGTGGATAATCGGTTGGGCGTTGATTCTGGA 674
Query 422 ATACACAATTGGTGGTTCAACAGTAGCTCGTGGCATATCTCCAAATCTGGCAATGATTTT 481
|| || |||||||| ||| | || || ||||||||||| || ||||||||| |||||||
Sbjct 675 GTATACCATTGGTGGCTCAGCTGTTGCCCGTGGCATATCCCCTAATCTGGCACTGATTTT 734
Query 482 CGGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCATCAAATCCCAGGCCTCGATAT 541
|||||||||||| || ||||| |||| ||||| || || || ||||||||||| |||||
Sbjct 735 TGGTGGTGAAGATGGTTTGCCTGCAATTTTAGCGCGCCACCAGATCCCAGGCCTTGATAT 794
Query 542 TGTTGTTGACCCATGTGCGGCTGTACTAGTGTTCATTGTAACAGGGCTCTTGTGCCTTGG 601
||||||||| |||||||| ||| | || ||||| ||||||| || || |||||| | ||
Sbjct 795 TGTTGTTGATCCATGTGCTGCTATTCTTGTGTTTGTTGTAACTGGCCTTTTGTGCATGGG 854
Query 602 AGTAAAAGAGAGCACATTTGCTCAGGGAATTGTAACAACAG-CAAATGTCTTTGTCATGC 660
| |||| ||||||||||||||||||||||||||||| ||| ||| ||| | |||| ||
Sbjct 855 AATAAAGGAGAGCACATTTGCTCAGGGAATTGTAACTGCAGTCAA-TGTGTGTGTCCTGT 913
Query 661 TATTTGTCATAGTAGTTGGTAGTTATCT-GTGTTTCAAGACTGGCTGGG-TAGGTTATGA 718
||||||||||||||| ||| |||||||| | | |||||||| || ||| | ||||||||
Sbjct 914 TATTTGTCATAGTAGCTGGCAGTTATCTCG-GCTTCAAGACAGGTTGGCCT-GGTTATGA 971
Query 719 ACTTCCAACGGGGTAT-TTTCCGTATGGG-GTTGATGGAATGCTTACTGGATCTGCTACT 776
||||||||| |||| | ||||| | | || || ||||||||| || |||| ||||||||
Sbjct 972 ACTTCCAACAGGGT-TCTTTCCAT-TCGGAGTAGATGGAATGTTTGCTGGTTCTGCTACA 1029
Query 777 GTCTTCTTTGCGTACATCGGGTTTGATTCAGTTTCAAGTATGGCAGAGGAGGTGAAAAAT 836
||||| ||||| | ||| ||||||||||| ||| |||||| ||||||||||||| ||||
Sbjct 1030 GTCTTTTTTGCATTCATTGGGTTTGATTCGGTTGCAAGTACCGCAGAGGAGGTGAGAAAT 1089
Query 837 CCCCAGCGGGATTTACCGCTCGGTATTGGTCTTTCGCTCATGCTT-TGTTGTT-TGCTAT 894
||||| |||||||||||| | |||||||||||| | ||| || || ||||||| | || |
Sbjct 1090 CCCCAACGGGATTTACCGATTGGTATTGGTCTTGCTCTCTTG-TTATGTTGTTCT-CTCT 1147
Query 895 ACATGATGGTCTCTGTTGTTATTGTTGGTTTAGTGCCGTATTATGCTATGGA-CCCTGAC 953
||||||||||||| | ||||||||||||||| | || || ||||| ||||| ||| |||
Sbjct 1148 ACATGATGGTCTCCATAGTTATTGTTGGTTTAATTCCTTACTATGCAATGGATCCC-GAC 1206
Query 954 ACTCCAATATCCTCTGCATTTGCTAGTCACGGA-ATTCAATGGGCCGCATATTTGATAAC 1012
|| || |||||||||||||| |||||||| | | || |||||||| | ||| || |||||
Sbjct 1207 ACCCCGATATCCTCTGCATTCGCTAGTCATG-ACATGCAATGGGCTGTATACTTAATAAC 1265
Query 1013 TTTAGGTGCTGTCATGGCTCTCTGTTCTGTTTTAATGGGCT-CCATTCTCCCTCAGCCGC 1071
|||||| ||||||||||| ||||| || | ||||||||| | || ||||||||||||| |
Sbjct 1266 TTTAGGAGCTGTCATGGCACTCTGCTCAGCTTTAATGGG-TGCCCTTCTCCCTCAGCCAC 1324
Query 1072 GGATTCTGATGGCAATGGCTAAGGATGGTCT-CTTGCCTTC-ATTTTTCTCA-A-ATGTG 1127
| ||||||||||||||||||| ||||||||| || ||||| |||||| ||| | || |
Sbjct 1325 GAATTCTGATGGCAATGGCTAGGGATGGTCTGCTC-CCTTCTATTTTT-TCAGACAT-T- 1380
Query 1128 AATCAACGCACGCAGGTTCCTGTTAATGGCACCA-TAACAACTGGTGTT-TGTG-TAGCA 1184
||| ||||||| |||||||| ||||| | || || | ||||||| ||| |||| | |||
Sbjct 1381 AATAAACGCACACAGGTTCCGGTTAAAG-CAACAGTGGCAACTGG-GTTGTGTGCT-GCA 1437
Query 1185 ATCTTAGCTTTCTTTATGGATGTTTCGCAACTGGC-GGGAATGGTGAGTGTCGGGACACT 1243
| |||||| ||||||||||||||||| || || || |||| |||||||||| ||||||||
Sbjct 1438 ACCTTAGCGTTCTTTATGGATGTTTCACAGCTTGCAGGGA-TGGTGAGTGTTGGGACACT 1496
Query 1244 TGTTGCATTTACAATGGTTGCAATATCAGTGTTGATAGTCAGATATGTTCCTCCAGATGA 1303
| | |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 1497 TCTGGCATTTACAATGGTGGCAATATCAGTGTTGATACTAAGATATGTTCCTCCAGATGA 1556
Query 1304 GAAAACTCATCCAGTCA-CGTCTTC 1327
| || ||| ||| |||| | |||||
Sbjct 1557 GCAACCTCTTCC-GTCATC-TCTTC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5