BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947318

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G36960.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   311    2e-84


> AT5G36960.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:14598693-14599988 
FORWARD LENGTH=725
Length=725

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 234/264 (89%), Gaps = 11/264 (4%)
 Strand=Plus/Plus

Query  12   TCGTCAACAATGGGAAAGATCCACAAAAACAATAACAAGATGGGTCAGAGAGTGGTCACC  71
            |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| 
Sbjct  320  TCGTCAACAACGGGAAAGATCCATAAGAACAATAACAAGATGGGTCAGAGAGTGGTCACG  379

Query  72   AAGAGAATAAATAGAGCTGAAATGGTTTTTAAGATGGCTCAACTTTGTCTCCAGAAGATA  131
            |||| || |||||||| |||||||||| || ||| |||||||||||||||||| ||||||
Sbjct  380  AAGAAAAAAAATAGAGTTGAAATGGTTCTTGAGAGGGCTCAACTTTGTCTCCAAAAGATA  439

Query  132  AGAGACGTGAAAGCcttttt-tgttgaccttttcttacaact-ttttcttctctctgttt  189
            |||||||||||||||| ||| |||||||| ||| |||||||| |||| || |||||||||
Sbjct  440  AGAGACGTGAAAGCCTCTTTGTGTTGACCCTTT-TTACAACTCTTTT-TT-TCTCTGTTT  496

Query  190  ttttGTTGCTGAAATGTATACGGAAAATAATAGTTACCGTCAGAGAAATTT-ATTGCAAG  248
            ||| |||| ||||||||||| ||||  | |||||||||||| ||||||| | ||||||||
Sbjct  497  TTTGGTTGATGAAATGTATAAGGAA--TGATAGTTACCGTCCGAGAAATGTGATTGCAAG  554

Query  249  TGATTATGAAAAGTAAAATGCTTC  272
            |||| |  ||||||||||||||||
Sbjct  555  TGAT-A--AAAAGTAAAATGCTTC  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12466401752


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5