BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947326

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37290.1 | Symbols:  | ARM repeat superfamily protein | chr5...   907    0.0  


> AT5G37290.1 | Symbols:  | ARM repeat superfamily protein | chr5:14762370-14764344 
FORWARD LENGTH=940
Length=940

 Score =  907 bits (491),  Expect = 0.0
 Identities = 545/572 (95%), Gaps = 0/572 (0%)
 Strand=Plus/Plus

Query  12   AGTCAGAAAATGTTTACAAATAATCAAAGACAAGAAGAACGTACTGGAAAACATGGAACA  71
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  AGTGAGAGAATGTTTACAAATAATCAAAGACAAGAAGAACGTACTGGAAAACATGGAACA  201

Query  72   CCAAGACTTCAATATCTTCAGGAGCTAGTGAGTCAGTTTCAAAATGCAACTGATGAAGAA  131
            ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  202  CCAAGGCTTCAATATCTTCAGGAGCTTGTGAGTCAGTTTCAGAATGCAACTGATGAAGAA  261

Query  132  ACAAAGGAGAGAATTGTAGCAAACTTGGCGAATTTTGCGTATGACCCTTATAACTACGCT  191
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct  262  ACAAAGGAGAGAATTGTAGCAAACTTGGCGAATTTTGCATATGACCCTTACAACTACACT  321

Query  192  ATTTTACGGCAGCTAAATGTCTTGGAACTATTCGTAGACTGTATAACAGAGCCAAATGAG  251
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  ATTTTACGTCAGCTAAATGTCTTGGAACTATTCGTAGACTGTATAACAGAGCCAAATGAG  381

Query  252  AAGCTTGTGGAATTTGGGATAGGAGGATTGTGCAACGCCTGTGCTGAGCCAAAAAATGTT  311
            |||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| |||
Sbjct  382  AAGCTTGTAGAATTTGGGATAGGAGGAATATGCAACGCTTGTGCCGAGCCAAAAAACGTT  441

Query  312  GCTACCATTGTCGAGGTTGATGGAATTCCTCTTATAATCAAATGTTTATCAAGTCCTGTA  371
            |||||||||||||||| ||||||||||||||| ||||||||||  |||||||| ||||| 
Sbjct  442  GCTACCATTGTCGAGGCTGATGGAATTCCTCTGATAATCAAATCCTTATCAAGCCCTGTC  501

Query  372  CGGAACACTGTGAACTACGCGCTTGGGGCTTTGTATTACATGTGTGACTATAACAGAGCA  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  CGGAACACTGTGAACTACGCGCTTGGGGCTTTGTATTACATGTGTGACTATAACAGAGCA  561

Query  432  ACAAGAGAGGAGATTTTGAGAGCAGAAGTGGTGGATCTCATAGAGAGGTACGCAGCGGCT  491
            || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct  562  ACGAGAGAGGAGATTTTGAGACCAGAAGTGGTGGATCTCATCGAGAGGTACGCAGCGGCT  621

Query  492  GAATCAGTCAGTGTAAGCTTTTGTAACTTGGCTAAGGCGTTTCTTGATAAGCATGTTCAT  551
            ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct  622  GAATCTGTCAGTGTAAGCTTTAGTAACTTGGCTAAGGCGTTTCTTGACAAGCATGTTCAT  681

Query  552  GCAAACACATGAGATTCTTGAATTTTATCTTC  583
            ||||||||||||||||||||||||||||||||
Sbjct  682  GCAAACACATGAGATTCTTGAATTTTATCTTC  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5