BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947327

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27606.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   104    4e-22


> AT5G27606.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9752002-9753404 
FORWARD LENGTH=813
Length=813

 Score =  104 bits (56),  Expect = 4e-22
 Identities = 118/146 (81%), Gaps = 12/146 (8%)
 Strand=Plus/Plus

Query  69   ATGGGGAAGAGAAAG-ATTTTGCGAAAAGAAAATGATTACGGAGATATTTCTCGGTTTGT  127
            ||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGGGGAAGCGAAAGAATTTAG-GAAAAGAAAATGATTACGGAGATATTTCTCGATTTGT  59

Query  128  GGAAGTAGCAAGCATATGG-GTTCATGTATTTATTACCGAAC-TAGCGCCGTTGCC-AAG  184
            || || |||  | |||  | |||||| ||||||||| ||  | ||| | ||||||| || 
Sbjct  60   GGGAGGAGCT-GTATACAGAGTTCATATATTTATTATCGC-CGTAGAGGCGTTGCCCAA-  116

Query  185  AC--CAGAACACACAAGCACCATAAA  208
            ||  || |||| |||  |||||||||
Sbjct  117  ACAACAAAACAAACA--CACCATAAA  140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5