BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947329
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37250.1 | Symbols: | RING/U-box superfamily protein | chr5... 704 0.0
AT5G37270.1 | Symbols: | RING/U-box superfamily protein | chr5... 704 0.0
AT5G37230.1 | Symbols: | RING/U-box superfamily protein | chr5... 704 0.0
> AT5G37250.1 | Symbols: | RING/U-box superfamily protein | chr5:14750393-14750971
FORWARD LENGTH=579
Length=579
Score = 704 bits (381), Expect = 0.0
Identities = 519/584 (89%), Gaps = 16/584 (3%)
Strand=Plus/Plus
Query 64 TCCTACCACAACATCTAGGGTTTGA-AAACAAAGTGTTCGTCTGTCTGCACA-ATGTGGT 121
||||||||||| ||| ||||||| | ||||| ||||||||| ||| || | |||||||
Sbjct 5 TCCTACCACAAGATCAAGGGTTT-AGAAACACCGTGTTCGTCAATCTACA-AGATGTGGT 62
Query 122 CAACGAGTTAGCTGAAGATCAAAACGGTATCGTAACGTATTTGGGAACGTTCTCGGATCC 181
|||||||||||||||||||||||||||| |||||| || ||||||||||||| ||| |||
Sbjct 63 CAACGAGTTAGCTGAAGATCAAAACGGTGTCGTAATGTGTTTGGGAACGTTCGCGGCTCC 122
Query 182 ACTTATGTCTAGAATCGAACTGAAACCATCATGTTTCTGTTCACATTACATCTCTCAACA 241
||||||| ||| ||||||| |||||||||||||| || |||||||| |||||| |||| |
Sbjct 123 ACTTATGACTAAAATCGAATTGAAACCATCATGTCTCAGTTCACATCACATCTATCAAGA 182
Query 242 CCTTGACGTGTTCATCACAAATCCTCAGTTTTGTCGAATGTTGAGTGAAAGAATCGCTTT 301
|||||||| |||||||||| || || ||||||||||| ||||||| ||||| |||| |||
Sbjct 183 CCTTGACGAGTTCATCACACATACTGAGTTTTGTCGATTGTTGAGCGAAAGGATCGTTTT 242
Query 302 GGATTGTGCTCCTCTTCCTCAACCTTTTAGTGTGACCTTTTACGTGAAAGTGATAAGAGA 361
||||||||||| | |||| ||||||||||||||| |||| |||||| |||||| ||||||
Sbjct 243 GGATTGTGCTCATATTCCCCAACCTTTTAGTGTGTCCTTATACGTGGAAGTGACAAGAGA 302
Query 362 TGTTCGAATTATGTTAC-CGTCTATTGCTGTTCGGTCGAAAGATATGTTTCAAAGATTGC 420
|||| | | ||| | |||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 303 TGTT--A-T---GTT-CTCGTCTATTGCTGTTAGGTCGACAGATACGTTTCAAAGATTGC 355
Query 421 TTGAGGAACAAACAGTGGAATTGACTGGTTTGGGAGATGAAGAAGAAACGACTTGTTCGA 480
|||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 356 TTGAGGAACAAACAATGGAATTGACTGATTTGGGAGATGAAGAAGAAACCACTTGTTCGA 415
Query 481 TTTGTATGGAGGACTTTTCGGAGAGTCGA-GATGATAACATCATTCTGTTGCCTGACTGT 539
||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 416 TTTGTTTGGAGGACTTTTCGGAGAGTC-ATGATGATAACATCATTCTGTTACCTGACTGT 474
Query 540 TATC-ATTTGTTCCATCAAAGTTGTATCTTTGAGTGGTTTAAGCGACAGAGGTCGTGTCC 598
| || ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 475 T-TCCATTTGTTCCATCAAAATTGTATCTTTGAGTGGCTTAAGCGTCAGAGGTCGTGTCC 533
Query 599 ATTGTGTCGACGAGTACCCTACGAGGAAGATCATGAAACAGAGT 642
||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 534 TTTGTGTCGACGAGTACCGTACGAGGAAGATCTTGAAACAGAGT 577
> AT5G37270.1 | Symbols: | RING/U-box superfamily protein | chr5:14757933-14758559
REVERSE LENGTH=627
Length=627
Score = 704 bits (381), Expect = 0.0
Identities = 529/600 (88%), Gaps = 12/600 (2%)
Strand=Plus/Plus
Query 46 TTACTACAAAAGCATTGCTCCTACCACAACATCTAGGGTTTGA-AAACAAAGTGTTCGTC 104
||||||||| |||| || ||||||||||| ||| ||||||| | ||||| |||||||||
Sbjct 35 TTACTACAACAGCAATGATCCTACCACAAGATCAAGGGTTT-AGAAACACCGTGTTCGTC 93
Query 105 TGTCTGCACAATGTGGTCAACGAGTTAGCTGAAGATCAAAACGGTATCGTAACGTATTTG 164
||| ||| ||||||||||||||||||||||||||||||||||| |||| | || ||||
Sbjct 94 AATCTACACGATGTGGTCAACGAGTTAGCTGAAGATCAAAACGGTGTCGTCATGTGTTTG 153
Query 165 GGAACGTTCTCGGATCCACTTATGTCTAGAATCGAACTGAAACCATCATGTTTCTGTTCA 224
||||||||| ||| |||||||||| ||| ||||||| |||||||||||||| || ||||
Sbjct 154 GGAACGTTCGCGGCTCCACTTATGACTAAAATCGAATTGAAACCATCATGTCTCACTTCA 213
Query 225 CATTACATCTCTCAACACCTTGACGTGTTCATCACAAATCCTCAGTTTTGTCGAATGTTG 284
||| |||||| |||| ||||||||| |||||||||| || | ||||||||||| |||||
Sbjct 214 CATCACATCTATCAAGACCTTGACGAGTTCATCACAGATATTGAGTTTTGTCGATTGTTG 273
Query 285 AGTGAAAGAATCGCTTTGGATTGTGCTCCTCTTCCTCAACCTTTTAGTGTGACCTTTTAC 344
|| ||||| ||||||||||||||||||| | |||| ||||||||||| || ||||||||
Sbjct 274 AGCGAAAGGATCGCTTTGGATTGTGCTCATATTCCCCAACCTTTTAGCGTCTCCTTTTAC 333
Query 345 GTGAAAGTGATAAGAGATGTTCGAATTATGTTACCGTCTATTGCTGTTCGGTCGAAAGAT 404
|||| ||| | |||||||||| | | |||||||||||||||||||| ||||| ||||
Sbjct 334 GTGAGAGTCACAAGAGATGTT--A-T---GTTACCGTCTATTGCTGTTCCGTCGAGAGAT 387
Query 405 ATGTTTCAAAGATTGCTTGAGGAACAAACAGTGGAATTGACTGGTTTGGGAGATGAAGAA 464
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 388 ATGTTTCAAAGATTGCTTGAGGAACAAACAATGGAATTTACTGATTTGGGAGATGAAGAA 447
Query 465 GAAACGACTTGTTCGATTTGTATGGAGGACTTTTCGGAGAGTCGA-GATGATAACATCAT 523
||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 448 GAAACCACTTGTTCGATTTGTTTGGAGGACTTTTCGGAGAGTC-ATGATGATAACATCAT 506
Query 524 TCTGTTGCCTGACTGTTATC-ATTTGTTCCATCAAAGTTGTATCTTTGAGTGGTTTAAGC 582
|||||||||||| |||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 507 TCTGTTGCCTGATTGTT-TCCATCTGTTCCATCAAAGTTGTATCTTTGAGTGGCTTAAGC 565
Query 583 GACAGAGGTCGTGTCCATTGTGTCGACGAGTACCCTACGAGGAAGATCATGAAACAGAGT 642
| |||||||||||||| ||||||||| ||||||| ||||||||||||| ||||| |||||
Sbjct 566 GTCAGAGGTCGTGTCCTTTGTGTCGAAGAGTACCGTACGAGGAAGATCTTGAAATAGAGT 625
> AT5G37230.1 | Symbols: | RING/U-box superfamily protein | chr5:14735154-14735780
FORWARD LENGTH=627
Length=627
Score = 704 bits (381), Expect = 0.0
Identities = 531/602 (88%), Gaps = 16/602 (3%)
Strand=Plus/Plus
Query 46 TTACTACAAAAGCATTGCTCCTACCACAACATCTAGGGTTTGA-AAACAAAGTGTTCGTC 104
||||||||| |||| || ||||||||||| ||| ||||||| | ||||| |||||||||
Sbjct 35 TTACTACAACAGCAATGATCCTACCACAAGATCAAGGGTTT-AGAAACACCGTGTTCGTC 93
Query 105 TGTCTGCACAATGTGGTCAACGAGTTAGCTGAAGATCAAAACGGTATCGTAACGTAT-T- 162
||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 94 AATCTACACGATGTGGTCAACGAGTTAGCTGAAGATCAAAACGGTGTCGTAA--TATGTC 151
Query 163 TGGGAACGTTCTCGGATCCACTTATGTCTAGAATCGAACTGAAACCATCATGTTTCTGTT 222
||||||||||| ||| |||||||||| ||| ||||||| ||||||||||||| || |||
Sbjct 152 TGGGAACGTTCGCGGCTCCACTTATGACTAAAATCGAATTGAAACCATCATGCCTCAGTT 211
Query 223 CACATTACATCTCTCAACACCTTGACGTGTTCATCACAAATCCTCAGTTTTGTCGAATGT 282
|||| |||||| |||| |||||||| |||||||||| || || ||||||||||| |||
Sbjct 212 CACACCACATCTATCAAGACCTTGACAAGTTCATCACACATACTGAGTTTTGTCGATTGT 271
Query 283 TGAGTGAAAGAATCGCTTTGGATTGTGCTCCTCTTCCTCAACCTTTTAGTGTGACCTTTT 342
|||| ||||| |||| |||||||||||||| | |||| ||||||||||| ||| ||||||
Sbjct 272 TGAGCGAAAGGATCGTTTTGGATTGTGCTCATATTCCCCAACCTTTTAGCGTGTCCTTTT 331
Query 343 ACGTGAAAGTGATAAGAGATGTTCGAATTATGTTACCGTCTATTGCTGTTCGGTCGAAAG 402
|||||| ||||| |||||||||| | | |||||||||||||| ||||||||||| ||
Sbjct 332 ACGTGAGAGTGACAAGAGATGTT--A-T---GTTACCGTCTATTGTTGTTCGGTCGAGAG 385
Query 403 ATATGTTTCAAAGATTGCTTGAGGAACAAACAGTGGAATTGACTGGTTTGGGAGATGAAG 462
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 386 ATATGTTTCAAAGATTGCTTGAGGAACAAACAATGGAATTGACTAATTTGGGAGATGAAG 445
Query 463 AAGAAACGACTTGTTCGATTTGTATGGAGGACTTTTCGGAGAGTCGA-GATGATAACATC 521
||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 446 AAGAAACCACTTGTTCGATTTGTATGGAGGACTTTTCAGAGAGTC-ATGATGATAACATC 504
Query 522 ATTCTGTTGCCTGACTGTTATC-ATTTGTTCCATCAAAGTTGTATCTTTGAGTGGTTTAA 580
||||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||
Sbjct 505 ATTCTGTTGCCTGACTGTT-TCCATCTGTTCCATCAAAGTTGTATCTTTAAGTGGCTTAA 563
Query 581 GCGACAGAGGTCGTGTCCATTGTGTCGACGAGTACCCTACGAGGAAGATCATGAAACAGA 640
||| |||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 564 GCGTCAGAGGTCGTGTCCTTTGTGTCGACGTGTACCGTACGAGGAAGATCTTGAAACAGA 623
Query 641 GT 642
||
Sbjct 624 GT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5