BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947330
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37280.1 | Symbols: | RING/U-box superfamily protein | chr5... 806 0.0
> AT5G37280.1 | Symbols: | RING/U-box superfamily protein | chr5:14761275-14761925
REVERSE LENGTH=651
Length=651
Score = 806 bits (436), Expect = 0.0
Identities = 591/664 (89%), Gaps = 17/664 (3%)
Strand=Plus/Plus
Query 24 ATGGAAACCGAAACTTTGAGAATACAAGTGGCTACGAGGATGTCGAACCTACCTCCGAAT 83
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 1 ATGGAAACCGAAACTTTGAGACTACAAGTGGCTACGAGGATGTCGAAGCTACCTTCGAAT 60
Query 84 CTAGGGTTCACGAGTGCAGT-CATAATCAAACTACACGAAGTGATCGAAGAGTTGCTCGA 142
||||||||||| ||||| || || |||| ||||||||||||| ||| | ||| |||||||
Sbjct 61 CTAGGGTTCACAAGTGCTGTCCA-AATCGAACTACACGAAGTAATCCATGAGATGCTCGA 119
Query 143 AGATGTTACTGGAACAACGCACGTGGCATCGTATGTGGCATCACTGTCTCCAATCTCT-A 201
||||||||||||||||| ||| | ||| |||||||||||||| ||||||||| |
Sbjct 120 AGATGTTACTGGAACAA--CAC----C--CGT-GGTGGCATCACTGTCGCCAATCTCTCA 170
Query 202 GTGTTCTCCTGAAGCCACGTAGCTTCTTACCAGAAAAGCTCTCTCGTCTCCTTCGTCGTC 261
||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 171 -TGTTCTCCTGAAGCCACGTAGCTTCCTACCAGAACAGCTCTCCCGTCTCCTTCGTCGTC 229
Query 262 AACTTAACCGTGAGACTCCTTTTTGTGAATTTTTGGCTGAGAAAATCTCCTT-T-TGTCG 319
||||| ||||||| ||| || ||||||||| ||||||||||||||||| ||| | | |||
Sbjct 230 AACTTCACCGTGATACTTCTATTTGTGAATCTTTGGCTGAGAAAATCT-CTTCTCT-TCG 287
Query 320 GTTTTCACGTGCTAATTACACTCTTTATCAAAGACCTTTTCTCATGTCGGTGAACGTGAG 379
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 288 ATTTTCGCGTGCTAATTACACTCTCTATCAAAGACCTTTTCTCATGACGGTGAAAGTGAG 347
Query 380 AGTCGTCAAAGAGGTTCGGTTTGTTTTGTCCTCTGTTTCTGCTCCGTTGAGTTGTGCTCC 439
|||| ||||||||||||||||| | | ||| ||||||||||||||| |||| |||||||
Sbjct 348 AGTCATCAAAGAGGTTCGGTTTATCGTATCCCCTGTTTCTGCTCCGTCGAGTGGTGCTCC 407
Query 440 CGTGGATGTGTTTCAGAGATTGCTTGAGGAACAAACTGTGGAACCGGCCAGGGATTTGGA 499
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 408 GGTGGATGTGTTTCAGAGATTGCTTGAGGAACAAACTGTGGAACCGTCCATGGATTCCGA 467
Query 500 TGAGTCGTGTTCAATCTGTTTTGAGAAGTTGTCTGAATCGTCATCGGGGAGTCATCATAA 559
|||||| ||||||||||||||||||||| ||||||| |||| ||||| || | |||||||
Sbjct 468 TGAGTCTTGTTCAATCTGTTTTGAGAAGCTGTCTGATTCGTTATCGGAGACTTATCATAA 527
Query 560 CAGCATCATTCAGATGCCTAAGTGTTTGCATTCGTTTCATCAAAACTGTATCTTTGAGTG 619
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 528 CAGCATCATTCAGATGCCCAAGTGTTTGCATTCGTTTCATCAAAAATGTATTTTTAAGTG 587
Query 620 GCTTGCTCGTCACAATTCGTGTCCCTTGTGTCGCAGAGTTCCGTTCGAAGAGGATCAAGA 679
| ||| |||||| ||||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 588 GATTGGTCGTCAAAATTCGTGTCCATTGTGTAGGAGAGTTCCGTTCGAAGAGGATGAAGA 647
Query 680 TTAG 683
||||
Sbjct 648 TTAG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5