BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947333

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G25550.1 | Symbols:  | myb-like transcription factor family ...   217    8e-56
  AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5...   211    4e-54
  AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 |...   202    2e-51


> AT1G25550.1 | Symbols:  | myb-like transcription factor family 
protein | chr1:8976434-8978093 FORWARD LENGTH=1396
Length=1396

 Score =  217 bits (117),  Expect = 8e-56
 Identities = 197/232 (85%), Gaps = 19/232 (8%)
 Strand=Plus/Plus

Query  164   TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA  223
             ||||||||| ||||| ||||||||||||||  |  |  ||||||||||||||||||||||
Sbjct  909   TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA  962

Query  224   TGACGAAGTTAAAAGCCATTTAC--------AGATTGCACACAAGAAGACCAGCTACTCC  275
             ||||||||||||||| |||||||        |||||||| ||||||||||||||||||||
Sbjct  963   TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC  1022

Query  276   GGTAGTAACAAACGGTGGTGAAAATACACAACAACGGCAATTCATGGTGGTGGAAGGAAT  335
             ||||||||  | ||||||||||||| ||||||||||||| || |||||| ||||||| ||
Sbjct  1023  GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT  1082

Query  336   T-GTG--CCGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGC  383
             | | |  || || ||||||||||| ||||||||||||||||||| || ||||
Sbjct  1083  TTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGC  1133


> AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5:22686832-22689471 
FORWARD LENGTH=2316
Length=2316

 Score =  211 bits (114),  Expect = 4e-54
 Identities = 134/144 (93%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  22   TGGCTTTGGACAAGATTAGATTTGAGTCGTTGACGGACAAGAGCAAGCTTGATGGTCAGC  81
            |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct  300  TGGCTTTGGACAAGATTAGATTCGAGTCCTTGACGGACAAGAGCAAGCTCGATGGTCAGC  359

Query  82   CTGAGCTATTCATTCATATCATTCCCGACAAGACTAACAACACCTTGAACATTATCGATA  141
            ||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct  360  CTGAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGACCATTATTGATA  419

Query  142  GTGGGATTGGGATGACTAAGGCTG  165
            |||| ||||| ||||| |||||||
Sbjct  420  GTGGTATTGGCATGACCAAGGCTG  443


> AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 
| heat shock protein 81-3 | chr5:22681305-22684129 FORWARD 
LENGTH=2423
Length=2423

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 132/143 (92%), Gaps = 2/143 (1%)
 Strand=Plus/Plus

Query  24   GCTTTGGACAAGATTAGATTTGAGTCGTTGACGGACAAGAGCAAGCTTGATGGTCAGCCT  83
            ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| 
Sbjct  229  GCTTTGGACAAGATTAGGTTTGAGTCCTTGACAGACAAGAGCAAGCTCGATGGTCAGCCA  288

Query  84   GAGCTATTCATTCATATCATTCCCGACAAGACTAACAACACCTTGAAC-ATTATCGATAG  142
            ||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  289  GAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGA-CGATTATCGATAG  347

Query  143  TGGGATTGGGATGACTAAGGCTG  165
            ||| ||||||||||| |||||||
Sbjct  348  TGGTATTGGGATGACCAAGGCTG  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18046121891


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5