BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947345
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A | chr5:23623858... 311 5e-84
> AT5G58440.1 | Symbols: SNX2a | sorting nexin 2A | chr5:23623858-23626787
REVERSE LENGTH=2171
Length=2171
Score = 311 bits (168), Expect = 5e-84
Identities = 223/249 (90%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 62 CAGTAAACAAGAGTTTTTGGAGCAGAGAAGAGTTGTATTGGAGAAATACTCGCGCAGGCT 121
||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 817 CAG-AAACAAGAGTTCGTGGAGCAGAGAAGAGTTGCATTGGAGAAATACTTGCGCAGGCT 875
Query 122 ATA-TGCACACCCTGTTATTAGGAACAGTGAAGAGTGGAAAGTGTTTCTTCAGGTGCAAG 180
| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 876 A-AGTGCACACCCTGTTATTAGGAACAGTGACGAGTTGAAAGTGTTTCTTCAGGTGCAAG 934
Query 181 GGAAGTTGCCACTACCAATGGGCACTAATGTGGCCTCTAGGATGTTGGATGGCGTGGTGA 240
|||||||||||||||||||| | ||| ||||||||||| ||||||||||||| | |||||
Sbjct 935 GGAAGTTGCCACTACCAATGAGTACTGATGTGGCCTCTCGGATGTTGGATGGGGCGGTGA 994
Query 241 AGCTTCCGAAACAGTTGTTTGGTGACGGCAGAGCCTCTGCCGTGCCAGTG-CATGAGGTA 299
|||| || ||||||||||| ||||| ||| |||||||||| ||||| ||| | ||||||
Sbjct 995 AGCTCCCAAAACAGTTGTTCGGTGAAGGCGGAGCCTCTGCAGTGCCGGTGAC-TGAGGTG 1053
Query 300 GTTCAGCCT 308
| |||||||
Sbjct 1054 GGTCAGCCT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25016605206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5