BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947352
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37000.1 | Symbols: | Exostosin family protein | chr5:14618... 1085 0.0
> AT5G37000.1 | Symbols: | Exostosin family protein | chr5:14618107-14620282
FORWARD LENGTH=1644
Length=1644
Score = 1085 bits (587), Expect = 0.0
Identities = 658/693 (95%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 866 ACCATTTGAAGGAATATGTCGATTTGATAGCAGGAAAGTATAAGTTCTGGAACCGAACTG 925
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 941 ACCATTTGAAAGAATATGTCGATCTGATAGCAGGAAAGTATAAGTTCTGGAACCGAACTG 1000
Query 926 GTGGAGCCGATCATTTTATTGTTGCTTGCCATGATTGGGGCAACAAACTAACCaa-aaaa 984
||||||| ||||||||| |||||||||| |||||||||||||||||||| | ||| ||||
Sbjct 1001 GTGGAGCTGATCATTTTCTTGTTGCTTGTCATGATTGGGGCAACAAACTGA-CAACAAAA 1059
Query 985 aCCATGAAGAACAGTGTTCGAGCACTTTGCAACTCAAATGTTGCCCAAGGCTTCAGAATT 1044
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 1060 ACCATGAAGAACAGTGTTAGATCACTTTGTAACTCAAATGTTGCCCAAGGCTTCAGAATT 1119
Query 1045 GGGACCGATACAGCTTTACCAGTCACATATATACGCTCTGCCGAGTCCCCTCTTGAGTAC 1104
||||||||||| |||||||| || ||||||||||||||| ||||| |||||||||||||
Sbjct 1120 GGGACCGATACTGCTTTACCGGTAACATATATACGCTCTTCCGAGGCCCCTCTTGAGTAT 1179
Query 1105 CTCGGTGGAAAAACTCCATCCGAAAGGAAGATTCTTACATTCTTTGCTGGCAGCATGCAC 1164
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1180 CTCGGTGGAAAAACTTCGTCCGAAAGGAAGATTCTTGCATTCTTTGCTGGCAGCATGCAC 1239
Query 1165 GGATATCTCCGTCCGATCCTAGTGAAGCTTTGGGAGAATAAAGAACCTGACATGAAGATT 1224
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GGATATCTCCGTCCGATACTAGTGAAGCTTTGGGAGAATAAAGAACCTGACATGAAGATT 1299
Query 1225 GTCGGTCCAATGCCTCGTGACCCCGAAAGCAAGAAACAATACCGAGAATACATGAAGAGC 1284
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1300 TTTGGTCCAATGCCTCGTGACCCTAAAAGCAAGAAACAATACCGAGAATATATGAAGAGC 1359
Query 1285 AGCAAGTACTGCATATGTGCGAGGGGTTATGAAGTCCACACCCCTAGGGTTGTCGAGGCT 1344
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1360 AGCAGGTACTGCATATGTGCGAGGGGTTATGAAGTCCACACTCCTAGGGTTGTCGAGGCT 1419
Query 1345 ATCATTAATGAATGTGTTCCGGTTATCATAGCTGACAACTACGTGCCTCCCTTTTTCGAG 1404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1420 ATCATTAATGAATGTGTTCCGGTTATCATTGCTGACAACTACGTGCCTCCCTTTTTCGAG 1479
Query 1405 ATTTTGAATTGGGAGGAATTTGCAGTGTTTGTTGAGGAGAAAGATATACCGAATCTGAGA 1464
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1480 GTTTTGAACTGGGAGGAATTTGCTGTGTTTGTTGAGGAGAAAGATATACCGAATCTGAGA 1539
Query 1465 AACATTCTGCTATCGATATCCGAAGAGAGATATATTGGCATGCAAGCAAGGGTTAAAGCG 1524
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1540 AACATTCTGCTATCCATACCCGAAGATAGATATATTGGCATGCAAGCAAGGGTTAAAGCG 1599
Query 1525 GTGCAGCAACATTTCCTGTGGCACAAGAAACCG 1557
|||||||||||||||||||||||||||||||||
Sbjct 1600 GTGCAGCAACATTTCCTGTGGCACAAGAAACCG 1632
Score = 713 bits (386), Expect = 0.0
Identities = 569/653 (87%), Gaps = 29/653 (4%)
Strand=Plus/Plus
Query 45 GAGATTTCATCATTCCGACATCCGGAGATTGTTGTCGGGAATCATTGTCACAGTTGGTTT 104
|||||||||||||||||||||| |||||||||||| |||||||||||| | || ||||||
Sbjct 15 GAGATTTCATCATTCCGACATCAGGAGATTGTTGTTGGGAATCATTGTTATAGCTGGTTT 74
Query 105 TGTTGTTCTGCTTGTTCAGTGTTTCGGTATTCCCTGTCCGAAAACGTTTTGCTTGTCTCC 164
|||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||
Sbjct 75 TGTTGTTCTGCTTGTTCAGTGTTTTGGTATTCCCTGTCGGAATTCTTTTTGCTTGTCTCC 134
Query 165 AGTTACGGTTTCAGTGATTGAGTCAACCAATTCCAATGTCACTCAAGTTTCTGTGATGAA 224
| ||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 135 AATTAAGGTTTCAGTGATTGAGTTAACTAACTCCAATGTCACTCAAGTTTCTGTGATGAA 194
Query 225 TTACATAAATCTCTCTGATATTGATAATGTTGATGAGGAATTTGAAGAGGGGAATAAAAA 284
|||| |||||| |||| | || ||| |||||||||| ||| | | ||||||||
Sbjct 195 CTACACAAATCTTTCTG--A-TG---ATGATGATGAGGAACTTG-A-A----AATAAAAA 242
Query 285 GAAGGATCTAGATGGAGAAAATGATGTTGTAATTAGCAAGGAGAAGGTAGAGATTAATGT 344
| ||||||| ||| | ||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 243 GGAGGATCTTGATAGCGAAAATGATGTGGTGATTAGTAAGGAGAAGGTAGAGATGAATGT 302
Query 345 ATCTGTTATTGCCAGAGCAAATATATCACTGAGGAAACCT---A------TTGATAGCTC 395
|||| ||||||| | || ||||||||| | ||||| ||| | ||| ||||||
Sbjct 303 ATCTTTTATTGCTATAGGAAATATATCTTTAAGGAATCCTAAAATGGTGGTTGTTAGCTC 362
Query 396 --AG--A-A-TCAGATCCAAATTTGGTTATGGTTAGGGTTAAAGATAGTAGAAATGGTAA 449
|| | | ||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 363 AGAGTCAGAGTCAGATCCAAATTCGGTTATGATTAGGGTTAAAGATAGTAGAAAGGGTAA 422
Query 450 TGTTTTGTCTATGAGGAAGCACGAGCGAGGG-GCTGCGATTTCGATATCTCAGATGAACT 508
|||||| ||| |||||| |||| ||| |||| | ||||||||||||||||||||||||||
Sbjct 423 TGTTTTATCTCTGAGGAGGCACAAGCAAGGGAG-TGCGATTTCGATATCTCAGATGAACT 481
Query 509 CACTGCTGATCCAGAGTCTTTCTTCTTTTAAATCCCCTAAGCCTCGGTGGTCATCTGCTC 568
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 482 CATTGCTGATCCAGAGTCTTTCTTCTTTTAAATCTCCTAAGCCTCGGTGGTCATCTGCTA 541
Query 569 GAGACTCTGAAATGCTCTCTGCGAGATTCGAGATTGAGAAAGCCTCTGTTGTGCATGAAT 628
||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||| |
Sbjct 542 GAGACTCTGAAATGCTCTCTGCGAGATCCGAGATTGAGAAAGTCTCTCTTGTTCATGATT 601
Query 629 TTCTTGGACTTAATGCTTCGGTTTATCGAAATATCTCCAAGTTTCTAAGGAGT 681
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 602 TTCTTGGACTTAATCCTTTGGTTTATCGAAATATCTCCAAGTTTCTAAGGAGT 654
Score = 279 bits (151), Expect = 4e-74
Identities = 179/192 (93%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 676 AGGAGTTACGACTTGATGGAGAGGAAACTCAAAG-TTTATGTGTACAAGGAAGGAGGGAA 734
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 691 AGGAGTTATGACTTGATGGAGAGGAAACTC-AAGATTTATGTGTACAAGGAAGGAGGGAA 749
Query 735 ACCAATATTCCATAAGCC-ACTGCCTCGAGGAATTTACGCCTCAGAAGGTTGGTTCATGA 793
|||||||||||| | ||| | ||||||||||||| ||||| |||||||||||||| ||||
Sbjct 750 ACCAATATTCCACACGCCGA-TGCCTCGAGGAATATACGCTTCAGAAGGTTGGTTTATGA 808
Query 794 AACTTATGGAAAGCAACAAGAAGTTTGTAGTAAGAGACCCTAGGAAGGCTCATTTGTTCT 853
|||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 809 AACTCATGGAAAGCAACAAGAAGTTTGTAGTAAAAGACCCCAGGAAGGCTCATTTGTTCT 868
Query 854 ACATACCCATCA 865
||||||||||||
Sbjct 869 ACATACCCATCA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5