BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947354
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37310.1 | Symbols: | Endomembrane protein 70 protein famil... 2981 0.0
AT2G01970.1 | Symbols: | Endomembrane protein 70 protein famil... 933 0.0
> AT5G37310.1 | Symbols: | Endomembrane protein 70 protein family
| chr5:14772512-14776207 REVERSE LENGTH=2143
Length=2143
Score = 2981 bits (1614), Expect = 0.0
Identities = 1756/1826 (96%), Gaps = 3/1826 (0%)
Strand=Plus/Plus
Query 2 TCTTTCTCTCTAATCTCAAATGGTAC-TATTGCATTCGATGACGTCGCTTCTTCTAGTGT 60
|||||||||||||| || |||||||| | || | ||||||||||||||||||||| ||||
Sbjct 96 TCTTTCTCTCTAATTTCTAATGGTACTTCTT-CCTTCGATGACGTCGCTTCTTCTGGTGT 154
Query 61 TCTTCTTCCTCTCCGGCGTTTCTCCGGTTATCTCTGACGGTTCCGATCACCGTTACAAGG 120
|| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 155 TCCTCTTCCTCTACGGCGTTTCTCCGGTTATCTCCGACGGCTCCGATCACCGTTACAAGG 214
Query 121 TCGGTGATGATGTTCCTCTTTACGCTAACAAAGTCGGTCCGTTTCATAATCCCAGTGAAA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 215 TCGGTGATGATGTTCCTCTTTACGCTAACAAAGTCGGACCGTTTCATAATCCCAGTGAAA 274
Query 181 CATATAGATACTTTGATCTTCCGTTCTGTTCATCAGCTCCTGTTAAGGAGAAGAAGGAAG 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 275 CATATCGATACTTTGATCTTCCGTTCTGTTCATCAGCTCCTGTTAAGGAGAAGAAGGAGG 334
Query 241 CTCTAGGGGAAGTTCTTAATGGAGATCGGTTAGTCAGTGCACCGTACAAACTTGAGTTTT 300
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 335 CTCTAGGGGAAGTTCTTAATGGAGATCGATTAGTCAGTGCACCTTACAAACTTGAGTTTT 394
Query 301 TGGGTGAGAAGAATTCTGAAGTTGCATGTAGGAAGAGGTTGAGTAGAGAAGATGTTGCAA 360
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 395 TGGGTGAGAAGAACTCTGAAGTTGCATGTAGAAAGAGGTTGAGTAGAGAAGACGTTGCTA 454
Query 361 AGTTTCGTGATGTGATTGCGAAAGACTATTACTTTCAGATGTATTATGATGACTTGCCCA 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 455 AGTTTCGTGATGTGATTGCGAAAGATTATTACTTTCAGATGTATTATGATGACTTGCCCA 514
Query 421 TCTGGGGATTCCTGGGGAAGGTTGTCAAAGAGGGAAAAACTGATCCATCCGAGTATAAAT 480
| ||||||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 515 TTTGGGGATTCCTTGGAAAAGTTGTCAAGGAGGGAAAGACTGACCCATCTGAGTATAAAT 574
Query 481 ATTATCTCTTCAATCATCTACAGTTTGAGATTTTCTATAATAAGGACCGTGTTATTGAAA 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 575 ATTATCTCTTCAATCATCTGCAGTTTGAGATTTTCTATAATAAGGACCGTGTTATCGAAA 634
Query 541 TTATTGTGAGAACAGACCAGAATTTCCTCGTGGACTTGACTGAGGACAAGGAAGTCCAAG 600
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 635 TTATCGTGAGGACAGACCAGAATTTCCTTGTGGACTTGACTGAGGACAAGGAAGTCCAAG 694
Query 601 TGGATTTCACATACACAGTTCGATGGAAGGAAACCGAAATCCCATTCGAGAAGAGGATGG 660
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 695 TGGATTTCACATACACAGTTCGATGGAAGGAAACTGAAATTCCATTCGAGAAGAGGATGG 754
Query 661 AGAAATACTCACTGGCTTCCTCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCA 720
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AGAAATACTCACTGGCTTCATCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCA 814
Query 721 TTAACTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTTATGCGAG 780
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 815 TTAATTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTCATGCGAG 874
Query 781 TCTTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTCGATGACCAAGAAG 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 875 TCTTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTTGATGACCAAGAAG 934
Query 841 AGACTGGGTGGAAACTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTAC 900
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 935 AGACTGGGTGGAAATTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTGC 994
Query 901 TGGCTGCAGCCCTTGGTTCTGGCACACAATTGTTTACACTAGCTGTTTTCATCTTCATGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TGGCTGCAGCCCTTGGTTCTGGCACACAATTGTTTACACTAGCTGTTTTCATCTTCATGC 1054
Query 961 TTGCGTTAGTTGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGG 1020
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TTGCATTAGTCGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGG 1114
Query 1021 TCATATATGCACTTACTTCAGGGATTGCCGGCTATACTGCTGCTTCTTTCTATTGCCAGC 1080
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1115 TCATATATGCTCTTACTTCAGGGATTGCCGGATATACTGCTGCTTCTTTCTATTGCCAGC 1174
Query 1081 TAGAAGGAACTAATTGGGTTAGGAATGTTATACTGACTGGAAGCCTTTTCTGTGGACCTC 1140
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1175 TAGAAGGAACTAACTGGGTTAGGAATGTTATACTGACTGGAAGCCTCTTCTGTGGACCTC 1234
Query 1141 TTTTGCTCACTTTCTCCTTTCTTAATACTGTTGCAATTGCTTACCAAGCCACTGCAGCAT 1200
||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1235 TTTTGATCACGTTCTCCTTCCTTAATACTGTTGCGATTGCTTACCAAGCCACTGCAGCGT 1294
Query 1201 TGCCATTTGGGACAATTGTTGTTATTTTCCTTATATGGGCACTGGTTACTTCACCATTGT 1260
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1295 TGCCATTTGGGACAATTGTGGTTATTTTCCTTATATGGGCTCTGGTTACTTCACCATTGT 1354
Query 1261 TAATACTGGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTA 1320
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TAATATTAGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTA 1414
Query 1321 CCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGA 1474
Query 1381 TGGCTATGGCTGGTTTTTTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGGCTATGGCTGGTTTTTTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1534
Query 1441 CCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGTCTATTGTCTTCCTTA 1500
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1535 CCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGTCTATCGTCTTCCTTA 1594
Query 1501 TTCTCGTCATAGTCACTGCTTTCATCACGGTTGCATTGACATACTTCCAACTTGCTGCTG 1560
||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1595 TTCTCGTTATAGTCACTGCTTTTATCACGGTTGCATTAACGTACTTCCAACTTGCTGCTG 1654
Query 1561 AAGACCATGAGTGGTGGTGGAGATCATTGCTATGTGGTGGATCAACGGGCTTATTCATAT 1620
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1655 AAGACCATGAGTGGTGGTGGAGATCATTGCTATGCGGTGGATCAACGGGCTTATTCATAT 1714
Query 1621 ACGCCTACTGCTTGTATTACTACTATGCACGGTCGGATATGTCAGGGTTCATGCAGACTT 1680
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1715 ATGCCTACTGCTTGTATTACTACTATGCACGATCAGATATGTCAGGGTTCATGCAGACTT 1774
Query 1681 CCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCGGGACAA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 CCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCGGGACAA 1834
Query 1741 TCGGATTCCGTGCTTCCCTTCTCTTTGTCCGTCACATTTACCGCTCGATCAAGTGCGAGT 1800
|||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1835 TCGGATTCTGTGCTTCCCTTCTCTTTGTTCGTCACATTTACCGCTCAATCAAGTGCGAGT 1894
Query 1801 AAAACTTGGAAGATTCTTCACTCCCT 1826
|||||||| |||||||||||||||||
Sbjct 1895 AAAACTTG-AAGATTCTTCACTCCCT 1919
> AT2G01970.1 | Symbols: | Endomembrane protein 70 protein family
| chr2:451871-454885 REVERSE LENGTH=2171
Length=2171
Score = 933 bits (505), Expect = 0.0
Identities = 1352/1752 (77%), Gaps = 94/1752 (5%)
Strand=Plus/Plus
Query 102 TCCGATCACCGTTACAAGGTCGGTGA-TGATGTTCCTCTTTACGCTAACAAAGTCGGTCC 160
||||| ||||||||||||| |||||| | |||||||| ||||| ||||| ||||| ||
Sbjct 145 TCCGACCACCGTTACAAGGACGGTGACT-CCGTTCCTCTCTACGCCAACAAGGTCGGCCC 203
Query 161 GTTTCATAATCCCAGTGAAACATATAGATACTTT-GATCTTCCGTTCTGTTCA-T-CAGC 217
||||| ||||||||||| || ||| | || ||| ||||| || || || | | | |||
Sbjct 204 CTTTCACAATCCCAGTGAGACGTATCGCTA-TTTCGATCTCCCCTTTTG-T-ATTCCAGA 260
Query 218 TCCTGTTAAGGAGAAGAAGGAAGCTCTAGGGGAAGTTCTT-AATGGAGATCGG-TTAGTC 275
||| || || |||||||||||||| || || ||| || ||||| ||| || || ||
Sbjct 261 GGGTGTGAAAGATAAGAAGGAAGCTCTTGGTGAGGTT-TTGAATGGGGATAGGCTT-GTT 318
Query 276 AGTGCACCGTACAAACTTGAGTTTTTG-GGTGAG-AAGAATTCTGAAGTTGCA-TGTAGG 332
||||| || ||||| ||| | ||| | | |||| ||| | || | || || | ||||
Sbjct 319 AGTGCTCCATACAAGCTT-AACTTTAGAGATGAGAAAG-ACTCAG-AGGTGTACTGTAAA 375
Query 333 AAG-AGGTTGAGTAGAGAAGATGTTGCAA-AGTTTCG-TGATG-TGATTGCGAAAGACTA 388
||| || || ||||||||||| |||| || | ||||| || | || ||| ||||| ||
Sbjct 376 AAGAAGCTT-AGTAGAGAAGAAGTTG-AACACTTTCGAAGA-GCTG-TTGAAAAAGATTA 431
Query 389 TTACTTTCAGATGTATTATGATGACTTGCCCATCTGGGGATTCCTGGGGAAGGTTGTCAA 448
|||||||||||||||||||||||| ||||| || ||||||||| | |||||||| | |||
Sbjct 432 TTACTTTCAGATGTATTATGATGATTTGCCTATTTGGGGATTCATTGGGAAGGTGGACAA 491
Query 449 AGAGGGAAAAACTGATCCAT-CCGAGTATAAATATTATCTCTTCAATCATC-TACAGTTT 506
|||| | ||| ||||||| | ||||| |||||||| ||||| ||| || | | ||||||
Sbjct 492 AGAGAGCAAATCTGATCC-TAGCGAGTTTAAATATTTTCTCTACAAACA-CATCCAGTTT 549
Query 507 GAGATTTTCTATAATAAGGACCGTGTTATTGAAATTATTG-TGAGAACAGA-CCAGAATT 564
|||||||| || |||||||| || || |||||||| | || | |||| || || | |
Sbjct 550 GAGATTTTGTACAATAAGGATCGGGTGATTGAAATCAATGCT-AGAATGGATCC-TCA-T 606
Query 565 TC-CTCGTGGA-CTTGACTGAGGACAAGGAAGTCCAAG-TGGA-TTTCACATACACAGTT 620
|| || ||||| ||| |||||||| ||||||||| | | | || ||| | ||||| | |
Sbjct 607 TCGCTTGTGGATCTT-ACTGAGGATAAGGAAGTCGATGCT-GAGTTT-ATGTACACTG-T 662
Query 621 CG-A-TGGAAGGAAACCGA-AATCCCATTCGAGAAGAGGATGGAGAA--ATACTCACTGG 675
| | ||||||||||| || | | | || ||||| || ||||| || || || | ||
Sbjct 663 -GAAGTGGAAGGAAACTGAGACT-TCTTTTGAGAAAAGAATGGATAAGTATGCT-A-TGT 718
Query 676 CTTCCTCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCATTAACTCATGTGTCA 735
|||| || | |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 719 CTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAACTCCTGCGTCA 778
Query 736 CAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTTATGCGAGTCTTGAAGAATGATT 795
| || ||||| ||||||||||||||||| || || || ||||| ||| | ||||||||||
Sbjct 779 CTGTCCTTCTTTTGACTGGTTTCCTTGCAACCATCCTGATGCGGGTCCTCAAGAATGATT 838
Query 796 TTGTCAAGTATGCACATGATGAAGAGGCAG-TCGATGACCAAGAAGAGACTGGGTGGAAA 854
| | |||||||| || ||||| || || | | ||||| ||||| || || || ||||||
Sbjct 839 TCATGAAGTATGCTCAAGATGAGGAAGCTGCT-GATGATCAAGAGGAAACCGGATGGAAA 897
Query 855 CTG-ATCCATGGTGATGTATTTAGGTTCCCCAAACA-CAAATCCCTACTG-GCTGCAGCC 911
| || ||||| ||||| || ||||||| ||| | |||||| || || |||||| |
Sbjct 898 -TACATTCATGGAGATGTCTTCCGGTTCCC-AAAGAACAAATCTCT-CTTTGCTGCATCT 954
Query 912 CTTGGTT-CTGGCACACAATTGTTTACACT-AGCTGTTTTCATCTTCATGCTTGCG-TTA 968
|||||| | || || || ||||| || || | | | ||||| ||||||||| | ||
Sbjct 955 CTTGGTAGC-GGTACCCAGTTGTTCACTCTGACCA-TCTTCATTTTCATGCTTTCACTT- 1011
Query 969 GTTGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGGTCATATAT 1028
||||| || || ||||| ||||||||||||||| | || ||||| || || || || |||
Sbjct 1012 GTTGGAGTGTTCTATCCATACAACCGTGGAGCACTCTTCACTGCTTTGGTCGTTATCTAT 1071
Query 1029 GCACTTACTTCAGGGATTGCCGGCTATACTGC-TGCTTCTTTCTATTGCCAGCTAGAAGG 1087
|| || || || || |||||||| || ||||| | || ||||||| || || || |||||
Sbjct 1072 GCTCTCACATCTGGAATTGCCGGATACACTGCCTCCT-CTTTCTACTGTCAACTCGAAGG 1130
Query 1088 AACTAATTGGGTTAGGAATGTTA-TACTGACTGGAAGCCTTTTCTGTGGACCTCT-TTTG 1145
|| |||||||| || ||| || | || |||||| | || |||||||| || || |||
Sbjct 1131 AAAGAATTGGGTGAGAAAT-TTGCTGCTAACTGGAGGTCTCTTCTGTGGCCCACTATTT- 1188
Query 1146 CTCACTTTCTCCTTTCTTAATACTGTTGCAATTGCTTACCAA-GCCACTGCAGCA-TTGC 1203
||||| |||| ||| || || || |||||||| || ||| | || ||||| || || |
Sbjct 1189 CTCACCTTCTGCTTCCTAAACACCGTTGCAATCGCATAC-AGTGCAACTGCCGCTCTTCC 1247
Query 1204 CATTTGGGACAATTGTTGTTATTTTCCTTATATGGGCACTGGTTACTTCACCATTG-TTA 1262
| ||||| || || | || || |||| |||||| |||| || ||||| || || ||
Sbjct 1248 C-TTTGGAACCATCATAGTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTG 1306
Query 1263 ATACTGGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTC-GTAC 1321
| |||| |||||||| || || ||||| ||| | ||||| |||||||| ||| | ||
Sbjct 1307 -TGTTGGGTGGTATTGCCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCCA-GTCCGCAC 1364
Query 1322 CACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGAT 1381
||| || ||||| | |||||||| ||| | | |||||| |||| | | ||||||||
Sbjct 1365 CACTAAGTATCCTCGGGAGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGAT 1424
Query 1382 GGCTATGGCTGGTTTT-TTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1440
||| |||||||| ||| || || ||||||||||| ||||||||||| || ||||| ||||
Sbjct 1425 GGCCATGGCTGGATTTCTT-CCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTTG 1483
Query 1441 CCAGTGTTTGGGGTCA-CAGAATATACACCATCTATAGTATTCTGT-CTATTGTCTTCCT 1498
||||||||||||| || | | || || ||||| || || || || | | || |||||| |
Sbjct 1484 CCAGTGTTTGGGGCCATC-GTATCTATACCATTTACAGCATCCTCTTC-ATCGTCTTCAT 1541
Query 1499 TATTCTCGTC-ATAGTCACTGCTTTCATCACGGTTGCA-TTGACATACTTCCAACTTGCT 1556
|| || || || ||||||||||| || || ||||| || || ||||||||||| |||
Sbjct 1542 CATCCT-GTTGATCGTCACTGCTTTTATAACAGTTGCCCTT-ACTTACTTCCAACTCGCT 1599
Query 1557 GCTGAAGACCATGAGTGGTGGTGGAGATCATTGCTATGTGGTGGATCAACGGG-CT-TAT 1614
|||||||| ||||| ||||||||||||||||| |||||||||||||| || || || | |
Sbjct 1600 GCTGAAGATCATGAATGGTGGTGGAGATCATTCCTATGTGGTGGATCGACTGGTCTGT-T 1658
Query 1615 TCATATACGCCTACTGCTTGTATTACTACTATGCACGGTCGGATATGTCAGGGTTCATGC 1674
| ||||| || |||||||| || |||||||| ||| | || || ||||| || |||||||
Sbjct 1659 T-ATATATGCGTACTGCTTATACTACTACTACGCAAGATCAGACATGTCTGGTTTCATGC 1717
Query 1675 AGACTTCCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCG 1734
| || ||||||||||| || |||||||||||||| || ||||| |||||||||||||| |
Sbjct 1718 AAACATCCTTCTTCTTCGGGTACATGGCTTGCATTTGTTACGGTTTCTTCCTCATGCTTG 1777
Query 1735 GGACAATCGGATTCCGTGCTTCCCTTCTCTTTGTCCGTCACATTTACCGCTCGATCAAGT 1794
| || | || ||||| ||| | || ||||| ||||| ||||||||||| ||||| || |
Sbjct 1778 GAACCGTTGGCTTCCGCGCTGCTCTCCTCTTCGTCCGCCACATTTACCGGTCGATTAAAT 1837
Query 1795 GCGAGTAAAACT 1806
||||||||||||
Sbjct 1838 GCGAGTAAAACT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90360981000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5