BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947361
Length=263
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37320.1 | Symbols: | Protein of unknown function (DUF674) ... 248 2e-65
> AT5G37320.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:14777931-14779717 FORWARD LENGTH=1623
Length=1623
Score = 248 bits (134), Expect = 2e-65
Identities = 191/218 (88%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 27 ATGGATCAAATATTC-GAGAATAGAATGATCAATGTTCTTCTTGCACATCATTTGGACAA 85
||||||||| | || | ||| | |||||||| ||||||||||| ||||||| |||||||
Sbjct 1 ATGGATCAAGGA-TCAGGGAAAACAATGATCAGTGTTCTTCTTGTACATCATGTGGACAA 59
Query 86 GAAAAAGGTTGTCTGGATTCAATCTGGTAATGATTTTGTTGATTTGCTT-TATAGTTTTC 144
|||||| |||||||||||||||||||||| ||| || ||||||||| || ||||||||||
Sbjct 60 GAAAAACGTTGTCTGGATTCAATCTGGTAGTGACTTCGTTGATTTG-TTCTATAGTTTTC 118
Query 145 TTACCATGCCTTTGGGAACCATTGTGAGGTTGCTTGAGAATCACGGAATATTAAGAGAAA 204
||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||
Sbjct 119 TTACCATGCCTTTGGGAACAATTGTGAGATTGCTTGAGCATCACGGAAGATTAAAAGAAA 178
Query 205 AAGTCAGCGTAGGTTGTCTCAACAACCATTTTTAGAAA 242
| |||||| |||||||| ||||||||| ||| || |||
Sbjct 179 AGGTCAGCATAGGTTGTTTCAACAACC-TTTATA-AAA 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12013992011
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5