BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947362

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37320.1 | Symbols:  | Protein of unknown function (DUF674) ...   241    5e-63


> AT5G37320.1 | Symbols:  | Protein of unknown function (DUF674) 
| chr5:14777931-14779717 FORWARD LENGTH=1623
Length=1623

 Score =  241 bits (130),  Expect = 5e-63
 Identities = 181/206 (88%), Gaps = 2/206 (1%)
 Strand=Plus/Plus

Query  211  GAGAAGAATTTGCAAGCAGATTGGGAGGTTGTAATGATTATGATGGAGTCTTTGTCCATG  270
            ||||||||| || |||||||||||||||| ||  |||| |||||||||||||||||||||
Sbjct  464  GAGAAGAATCTGTAAGCAGATTGGGAGGTAGTTGTGATGATGATGGAGTCTTTGTCCATG  523

Query  271  GTGATGGAAATTTTGCATTTGTAATGAGTGATGATTTGATAATCGAGAATTTTTCTTGGG  330
            ||||||||||| | |||||| |  ||||||||||||||| ||||||||||||||||||||
Sbjct  524  GTGATGGAAATATGGCATTTATGTTGAGTGATGATTTGACAATCGAGAATTTTTCTTGGG  583

Query  331  ATCTTTTCCTGAAACCTGTCAAGGATTTAGGCTGCGTTAACGTTTTAGATGAGTT-GGTA  389
            |||||  || ||||| ||||||||||||||| ||||||||||| || ||| |||| ||  
Sbjct  584  ATCTTCCCCGGAAACGTGTCAAGGATTTAGGTTGCGTTAACGTGTTCGATAAGTTAGGG-  642

Query  390  GAGGGTGAAGCAGAAATTGGCTTCCG  415
            ||||||||| ||||| ||||||||||
Sbjct  643  GAGGGTGAACCAGAAGTTGGCTTCCG  668


 Score =  220 bits (119),  Expect = 7e-57
 Identities = 165/187 (88%), Gaps = 4/187 (2%)
 Strand=Plus/Plus

Query  27   ATGGATCAAATATTC-GAGAATAGAATGATCAATGTTCTTCTTGCACATCATTTGGACAA  85
            |||||||||  | || | ||| | |||||||| ||||||||||| ||||||| |||||||
Sbjct  1    ATGGATCAAGGA-TCAGGGAAAACAATGATCAGTGTTCTTCTTGTACATCATGTGGACAA  59

Query  86   GAAAAAGGTTGTCTGGATTCAATCTGGTAATGATTTTGTTGATTTGCTT-TATAGTTTTC  144
            |||||| |||||||||||||||||||||| ||| || ||||||||| || ||||||||||
Sbjct  60   GAAAAACGTTGTCTGGATTCAATCTGGTAGTGACTTCGTTGATTTG-TTCTATAGTTTTC  118

Query  145  TTACCATGCCTTTGGGAACCATTGTGAGGTTGCTTGAGAATCACGGAATATTAAGAGAAA  204
            ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||
Sbjct  119  TTACCATGCCTTTGGGAACAATTGTGAGATTGCTTGAGCATCACGGAAGATTAAAAGAAA  178

Query  205  AAGTCAG  211
            | |||||
Sbjct  179  AGGTCAG  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5