BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947365
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein | chr5:148... 1814 0.0
> AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein | chr5:14812685-14816520
REVERSE LENGTH=1490
Length=1490
Score = 1814 bits (982), Expect = 0.0
Identities = 1143/1216 (94%), Gaps = 30/1216 (2%)
Strand=Plus/Plus
Query 14 ATAAAACATGGCGGAGATACAGACGAATGGGAGGGCGTATGAGTCATTATTGGAAAAGGT 73
|||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||
Sbjct 142 ATAAAACATGGCGGAGATACAGTCAAATGGAAGGGCATATGAGTCATTATTGGAAAAGGT 201
Query 74 TCTTTCAATGAACATTCTTTCTTCTGACTATTTCAAAGAGCTCTATGGTTTAAAGACTTA 133
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 202 TCTTTCAATGAACATTCTTTCTTCTGACTATTTTAAAGAGCTCTATGGTTTAAAGACTTA 261
Query 134 TCATGAGGTTATTGATGAAATCTACAACCAAGTTAATCATGTGGAGCCGTGGATGGGTGG 193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCATGAGGTAATTGATGAAATCTACAACCAAGTTAATCATGTGGAGCCGTGGATGGGTGG 321
Query 194 AAACTGCCGCGGTCCTTCAACAGCGTATTGTCTTCTCTACAAATTCTTTACCATGAAACT 253
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GAATTGCCGTGGTCCTTCAACAGCGTATTGTCTTCTCTACAAATTCTTTACCATGAAACT 381
Query 254 TACCGTGAAGCAGATGCATGGGTTGTTGAAGCACACAGATTCTCCTTATATTAGAGCGGT 313
||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 382 TACAGTGAAGCAGATGCATGGACTGTTAAAGCACACAGATTCTCCTTATATTAGAGCGGT 441
Query 314 TGGATTCCTATATTTAAGATATGTTGCAGATGCAAAGACGTTGTGGACATGGTATGAGCC 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 442 TGGATTCCTATATTTAAGATATGTTGCAGATGCAAAGACGTTGTGGACATGGTATGAACC 501
Query 374 ATACATTAAAGATGATGAGGAGTTTTCACCTGGATCAAATGGACGGATGACGACAATGGG 433
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 502 ATACATTAAAGATGATGAGGAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGG 561
Query 434 TGTTTATGTACGTGATTTGCTGCTTGGACTGTACTACTTTGATACTCTGTTTCCTCGTAT 493
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 562 TGTTTATGTACGTGATTTGCTGCTTGGACTGTACTACTTTGATACTTTGTTTCCTCGTAT 621
Query 494 ACCTGTTCCCGTGATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAA 553
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAA 681
Query 554 ACCTTCTGGATCAACCGGAGACATGACCCGTGGCTCAGAAGACACTGCCCGTCGTCCACC 613
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ACCTTCTGGTTCAACCGGAGACATGACCCGTGGCTCAGAAGACACTGCCCGTCGTCCACC 741
Query 614 ATCAGTAAAAGCATCCCTCTCTGTATCATTTGGTCAGCGTGCACCTCATCGTGCTTCCAC 673
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 742 ATCAGTAAAAGCATCCCTCTCTGTTTCATTTGGTCAGCGTGCACCTCATCGTGCTTCCAC 801
Query 674 CAGAGGCTCCTCTCCGGTTCGCCGTCCTCCACTGTCTGGTTATGACAGAAATGGAGGCGA 733
||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 802 CAGAGGCTCTTCTCCTGTTCGCCGTCCTCCACCGACTGGTTATGACAGAAATGGAGGCGA 861
Query 734 TGAAGTAAAACAGCGGTCCCCACGTAGAAGCCAGAGCCGAGACTATTATTCTGATagaga 793
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 862 TGAAGTACAACAGCGGTCCCCACGTAGAAGCCAGAGCCGAGACTATTATTCTGACAGAGA 921
Query 794 ctcagatagacagcgggagagagagagggagaaagaccgcgaaagggacagagacagaga 853
|||||||||||| ||||| |||||||||||||||||||||||||| | |||| | |
Sbjct 922 CTCAGATAGACAACGGGAAAGAGAGAGGGAGAAAGACCGCGAAAG--A--GAGA--G-G- 973
Query 854 cagggagagggagagagatagatacagagaAAGGGAAAGGGATTATGGTAATGATAGGAG 913
||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 --GGGAG-GG-A------TAGATACAGAGAAAGGGAAAGGGATTATGGTAATGATAGGAG 1023
Query 914 ATCAAGGCGTGACTATGATAGTAGAAGCAAACGCAATGATTATGAGGATGATAGAAGCAG 973
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 1024 ATCAAGGCGTGACTATGATAGTAGAAGCAGGCGCAATGATTATGAGGACGACAGAAGTAG 1083
Query 974 ACATAACCGGAGAAGCAGGAGCAGAAGCAGAAGTAGGAGCAGGAGTGTGCAGATTGAGCG 1033
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ACATGACCGGAGAAGCAGGAGCAGAAGCAGAAGTAGGAGCAGGAGTGTGCAGATTGAGCG 1143
Query 1034 TGAACCAACTCCTA---G---------CAACAAGGAGAAATCTGCTGTGACTGTGAACAG 1081
|||||| ||||||| | |||||| |||||||| || ||||| ||||||||
Sbjct 1144 TGAACCGACTCCTAAAAGAGATAGTAGCAACAAAGAGAAATCGGCGGTGACAGTGAACAG 1203
Query 1082 CAATCTCGCAAAGCTAAAAGATTTGTATGGAGACGCGAGTAGTCAGAAAAGGGATGAAGG 1141
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1204 CAATCTCGCAAAGCTAAAAGATTTGTATGGAGACGCAAGTAGTCAGAAAAGGGATGAAGG 1263
Query 1142 ATTTGGAACAAGGAGAGATTCAAGTTCAGAAGAAGTGATAAAGCTTGGTGGCTCTTCTTG 1201
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1264 ATTTGGAACAAGGAAAGATTCAAGTTCAGAAGAAGTGATAAAGCTTGGTGGTTCCTCTTG 1323
Query 1202 GAGGTGaaaaaacaaa 1217
||||||||||||||||
Sbjct 1324 GAGGTGAAAAAACAAA 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5