BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947372
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r... 1522 0.0
> AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein
4r1 | chr3:6200578-6204583 FORWARD LENGTH=2655
Length=2655
Score = 1522 bits (824), Expect = 0.0
Identities = 1086/1210 (90%), Gaps = 28/1210 (2%)
Strand=Plus/Plus
Query 697 TTGAGCCTTGTGAT-GGTTCCGAGGATAATGATGAAAAGATATCTCCTTCCATGTTGGGT 755
||| |||||||||| | || ||||| ||||||| ||||||||||||||| | |||||||
Sbjct 1028 TTGGGCCTTGTGATAGCTT-CGAGGGTAATGATAAAAAGATATCTCCTTTGACGTTGGGT 1086
Query 756 CCACG-GGAAAACCCCTGTGTTGCAAGTTATAGGATGGCACTAGAGAAATATCCAGTTTT 814
||| | ||||||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1087 CCA-GCGGAAAACCCTTGTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTTC 1145
Query 815 AGAGGAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTTGCAAAAGGTCTAAAACA 874
|| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1146 AGTGAAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAACA 1205
Query 875 ACAAGTTCAAAAAATACTGCTTTCTGAGGCTATTGAACAGTCCAGTGACTGGGAAGGATC 934
| |||||||||| |||||||||||||| || ||||||| ||||||||||| ||||||| |
Sbjct 1206 AGAAGTTCAAAAGATACTGCTTTCTGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAGC 1265
Query 935 TACATATGATATAGACACCATAAACGAATCGATCGGAAATCTTGAGATCACACCAGAAAT 994
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1266 TACATATGATATAGACACTATCAATGAATCGATCGGAAATCTTGAGATCACACCAGAAAT 1325
Query 995 GATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTTC 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1326 GATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTGC 1385
Query 1055 TGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGCTCCGTG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1386 TGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGTG 1445
Query 1115 GACTGCAGCAGAGGACAAAAACCTACTCCGAGTTATCGAGAAAAA-GAGTCTTACAGACT 1173
||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||
Sbjct 1446 GACTGCAGCAGAGGACAAAAACCTACTCCGAACTATCGA-ACAAACGAGTCTTACAGACT 1504
Query 1174 GGCTTGGCATCGCGGTATCATTAGGGACAAATAGGACCCCATTTCAATGTCTGGCTCGAT 1233
|| ||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1505 GGGTTGATATCGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGAT 1564
Query 1234 ATCAGAGAAGCTTGAATCCAAGCATATTGAGAAAAGAATGGACTGCAGAGGAAGATGACC 1293
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1565 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACC 1624
Query 1294 AACTTCGTGCTGCAGTAGAGTTATTTGGCGATAAAGACTGGCAATCTGTTGCAAATGTAT 1353
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1625 AACTTCGTACTGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTAT 1684
Query 1354 TAAAAGGAAGATTTGGAAAACAATGCTCAAATAGATGGAAAAATTCACTTTGCCCTACCA 1413
||||||||||| ||||| || ||||| |||||||||||||| || ||| |||||||||
Sbjct 1685 TAAAAGGAAGAACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCA 1744
Query 1414 GAAAAGGGAGATGGAGCTCAGAGGAAGACAAACGTCTGAAAG-TAGCTGTGACACTCTTT 1472
||||||||| |||||||| |||||||||||||||| | |||| |||||||||||||||||
Sbjct 1745 GAAAAGGGACATGGAGCTTAGAGGAAGACAAACGTGT-AAAGGTAGCTGTGACACTCTTT 1803
Query 1473 GGAGCTAAAAATTGGCCGAAGATTTCTTC-GTTTGTTCCTGGACGGACCGCA-AGTCAGT 1530
||| || |||| |||| || |||||| | |||||||||||||||||| || | |||||
Sbjct 1804 GGATCTCAAAACTGGCATAAAATTTCT-CAGTTTGTTCCTGGACGGACT-CAGACTCAGT 1861
Query 1531 GTCGAGAGAGATGGCTAGATTCTTTAGAGTCCaaaaa-aaaTTGTGGGAAGTGGACCGAG 1589
|||| ||||||||| || ||| |||||| ||| ||| |||| ||||||||||||| |||
Sbjct 1862 GTCGGGAGAGATGGTTAAATTGTTTAGA-TCCCAAAGTAAATCGTGGGAAGTGGACTGAG 1920
Query 1590 GAAGAGGATCAAAAGTTGAGAGAAGCAATTGCAGTA-CACGGATATAGCTGGGTC-AAGG 1647
||||||||| |||||||||||||||||||||||| | || |||||||||||| || ||||
Sbjct 1921 GAAGAGGATGAAAAGTTGAGAGAAGCAATTGCAG-AGCATGGATATAGCTGG-TCTAAGG 1978
Query 1648 TGGCTTC-ACATGTGTC-TCTTCGTACTGACAGTCAGTGCTCGAGGAGATGGAAGAC-TC 1704
||||| | | || |||| | | |||||||||| |||||||| |||||||||||||| |
Sbjct 1979 TGGCTACTA-ATCTGTCATGT-CGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGAT- 2035
Query 1705 TAAATCCTCACCTAGTG-CAACTTTTACTAGAAGCTAGAAAGTTACGAAAAGAAGCTACT 1763
|| ||||||| | |||| | ||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 2036 TATATCCTCATCAAGTGGCT-CTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGT 2094
Query 1764 GCAGGTAATTTTGTTGATCGGGAATCAGAGCGTCCTGCT-TATATCGCAGGCCCTATTTT 1822
| ||||||||||||||||||||||||||||||||||||| | | || || ||||||||||
Sbjct 2095 GTAGGTAATTTTGTTGATCGGGAATCAGAGCGTCCTGCTCT-TGTCACAAGCCCTATTTT 2153
Query 1823 GGCACTACCAGAGATATCTCTAGCGCCAGAATCCGATATTGCAGCCCTGGAGAAGAAACG 1882
||||||||| || |||||||||| ||||||| |||||| || ||||||| ||||||||||
Sbjct 2154 GGCACTACCGGATATATCTCTAGAGCCAGAACCCGATAGTGTAGCCCTGAAGAAGAAACG 2213
Query 1883 CAAAGCCAAG 1892
||||||||||
Sbjct 2214 CAAAGCCAAG 2223
Score = 121 bits (65), Expect = 3e-26
Identities = 129/157 (82%), Gaps = 15/157 (10%)
Strand=Plus/Plus
Query 223 ATGTGTCCCTCCCTCTC-ATTGGTTTATCTGACGATGAAGAAGATGAAACCCTT----C- 276
|||||||||| |||| | ||||||||||||||||||||||||||||| || || |
Sbjct 476 ATGTGTCCCTTCCTC-CAATTGGTTTATCTGACGATGAAGAAGATGATGCCTTTGAAACA 534
Query 277 -T-CG--CTATACAG-AGGCGATTCTCTGCATATAA-AAGTTTTGATCCCGAAGGAAATT 330
| || |||| | | |||||||||||||| ||||| || ||| ||| | |||||||| |
Sbjct 535 CTTCGTGCTATTC-GTAGGCGATTCTCTGCTTATAAGAA-TTTCGATTCGGAAGGAAAAT 592
Query 331 TCATGAATGATTCTCCCAGGAAGAAAAGGCAGGTACA 367
||||||||||||||| | ||||||||| |||||||||
Sbjct 593 TCATGAATGATTCTCACGGGAAGAAAAAGCAGGTACA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94879030050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5