BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947373

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44070.1 | Symbols:  | Glycosyl hydrolase family 35 protein ...   158    6e-38
  AT3G43580.1 | Symbols:  | Beta-galactosidase related protein | ...  63.9    1e-09


> AT3G44070.1 | Symbols:  | Glycosyl hydrolase family 35 protein 
| chr3:15828177-15829088 REVERSE LENGTH=831
Length=831

 Score =  158 bits (85),  Expect = 6e-38
 Identities = 195/247 (79%), Gaps = 12/247 (5%)
 Strand=Plus/Plus

Query  172  TTGCTCGAAACCTTGTCAAAGCACTACCTCGTGTAGTTC-TTCTCGTGCCGGCGAGAATC  230
            ||||||||  ||||||||||||||||||||||||||||  || | |||||| ||||  ||
Sbjct  479  TTGCTCGAGCCCTTGTCAAAGCACTACCTCGTGTAGTTTGTT-TGGTGCCGCCGAGTTTC  537

Query  231  TCGACTTTGGTCCATCCACCAACGCCACTTCGTCTCTTGATAGTGGCTAATTTTTTCT-C  289
             || |||||  || | |||||||||||||||||||||||| | || | |||| || || |
Sbjct  538  ACGTCTTTGACCCTTACACCAACGCCACTTCGTCTCTTGACAATGACGAATTGTT-CTTC  596

Query  290  CGTTGACTCGCTCTTGGAAGACTCATCAATTAT-TTTTGATCTCACATGTACCAA-AATG  347
            | |||| | |||||||||||| |  || ||| | |||||||||||| || ||||| ||  
Sbjct  597  CTTTGATTTGCTCTTGGAAGATTTGTCGATT-TCTTTTGATCTCACTTGCACCAACAAA-  654

Query  348  CTT-CATAACTTTTGGCTCAAAACTCTTAAGAAGTT-ATTATCGATTAACTTTATCTATC  405
             || | || ||||||| ||||| | || ||| | || || ||||||||||  ||||||||
Sbjct  655  -TTACCTAGCTTTTGGTTCAAAGCCCTCAAGGATTTGAT-ATCGATTAACCCTATCTATC  712

Query  406  TTTTTAT  412
              |||||
Sbjct  713  CCTTTAT  719


> AT3G43580.1 | Symbols:  | Beta-galactosidase related protein 
| chr3:15502143-15503606 FORWARD LENGTH=1464
Length=1464

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 46/52 (88%), Gaps = 0/52 (0%)
 Strand=Plus/Plus

Query  12   AACGGCATTATGATCCCGCATCCAAGGAGCGGTGATTACCGAAGCTTCTTCA  63
            |||| |||||| |||||   || |||||||||||||||||||||||||||||
Sbjct  904  AACGACATTATCATCCCATTTCTAAGGAGCGGTGATTACCGAAGCTTCTTCA  955



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5