BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947382

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45100.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   228    7e-59
  AT5G40275.1 | Symbols:  | other RNA | chr5:16098190-16100051 RE...   147    2e-34


> AT1G45100.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494

 Score =  228 bits (123),  Expect = 7e-59
 Identities = 228/275 (83%), Gaps = 22/275 (8%)
 Strand=Plus/Plus

Query  230  AGGAAGCTGCCACAACAAAAACGCTCTATGTTGCCAATCT-C-T-ATCGTAACATTAAAA  286
            |||||||||||| |||||||||||||| |||||||||||| | | | | |  |||| | |
Sbjct  722  AGGAAGCTGCCATAACAAAAACGCTCTTTGTTGCCAATCTCCGTGA-C-T-CCATTCAGA  778

Query  287  TATCAGATATAATCAATTTCTTCAAAGATGTTGGGGAAGTTGTTCATGTTCGACTTATTG  346
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  779  TATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTG  838

Query  347  TAAACAGCAAGGG-CTGTTATGCGTGCTGGTGCTTTGTTGAGTTTGCTTCTGCTAACGAA  405
            |||||||| ||||   |  ||||| ||||| | |||||||||||||||||||||||||||
Sbjct  839  TAAACAGCCAGGGAAAG-CATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAA  897

Query  406  GCAGAGAAG--------AA----CGGTGAATATTTGGACGATCGCAAGATTTTTCTTGAA  453
            |||||||||        ||    ||||||||||||| || ||  |||||||| |||||| 
Sbjct  898  GCAGAGAAGGCGCTGGTAAAGAACGGTGAATATTTGCACAATTACAAGATTTCTCTTGAC  957

Query  454  GCG-GTTAAGACAGTTCCATTCAGTCCACCCAAGT  487
            | | | |||||||| ||||  | ||||||||||||
Sbjct  958  G-GAGCTAAGACAGCTCCACACCGTCCACCCAAGT  991


 Score =  126 bits (68),  Expect = 3e-28
 Identities = 104/121 (86%), Gaps = 4/121 (3%)
 Strand=Plus/Plus

Query  576  CATCAAATTCTTTGAAGATATTGGAGAAGTTGTTCATGTTCGACTTATTGTAGACTA-C-  633
            |||||| |||||  ||||| |||||||||||||||||||||||||||||||| || | | 
Sbjct  789  CATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCC  847

Query  634  ATGGGTGAGCATGTGGACTGTGGCTTTGTTGAGTTTACTTCTTCTAACGAAGCAGAGAAG  693
            | |||  |||||| || ||| || |||||||||||| ||||| |||||||||||||||||
Sbjct  848  A-GGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG  906

Query  694  G  694
            |
Sbjct  907  G  907


> AT5G40275.1 | Symbols:  | other RNA | chr5:16098190-16100051 
REVERSE LENGTH=895
Length=895

 Score =  147 bits (79),  Expect = 2e-34
 Identities = 144/174 (83%), Gaps = 9/174 (5%)
 Strand=Plus/Plus

Query  246  AAAA-ACGCTCTATGTTGCCAATCTCTAT-CGTAACATTAAAATATCAGATATAATCAAT  303
            |||| ||||||| |||| ||  ||||| | || ||   | ||||||||||||| ||||||
Sbjct  515  AAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAA-GCTCAAATATCAGATATCATCAAT  573

Query  304  TTCTTCAAAGATGTTGGGGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCAAGGGCTG  362
            ||||||||||| |||||  ||||||| |||||||||||||||||| || | || |||| |
Sbjct  574  TTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA-CACGGGC-G  631

Query  363  -TTATGCGTGCTGGT-GCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG  414
               ||| | || | | ||||||||||||||||||||||||||||||||||||||
Sbjct  632  AGCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG  684



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35163902900


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5