BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947385

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   364    2e-100


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  364 bits (197),  Expect = 2e-100
 Identities = 264/294 (90%), Gaps = 13/294 (4%)
 Strand=Plus/Plus

Query  1     CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA  60
             |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct  1194  CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA  1253

Query  61    AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTA  119
             |||| |||||||||||||||| | ||||||||  |  |||| ||||||||||||||||||
Sbjct  1254  AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA  1312

Query  120   AGTGGTGAAGGTGGAGAAGAAACGCAAAATATTTTGCTACTTGATGTTGCGCCTTTGCA-  178
             ||||||||||||||||||||||| ||||||||| | || |||||||||||||||||| | 
Sbjct  1313  AGTGGTGAAGGTGGAGAAGAAACACAAAATATTCTACTGCTTGATGTTGCGCCTTTG-AG  1371

Query  179   CCTCGGTATTGACACTGTCGGAGGCGTGATGACAAACATTATTCCT-----C--GG--AT  229
              ||||||||||| ||||||||||||||||||||||||||||||||      |  ||  ||
Sbjct  1372  TCTCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGAT  1431

Query  230   CCCAACGAAGAAGTCTCAGGTGTTCACTACTTAGCAAGATCAGCAAACTACTGT  283
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1432  CCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGT  1485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5