BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947400
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrog... 3698 0.0
AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomer... 222 1e-56
> AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase,
mitochondrial, putative | chr5:14897410-14900647 FORWARD
LENGTH=2527
Length=2527
Score = 3698 bits (2002), Expect = 0.0
Identities = 2170/2253 (96%), Gaps = 4/2253 (0%)
Strand=Plus/Plus
Query 1 CGATACAGATCCACAACGCCATGGGTTTAGGCATCTTAGCTTCTCGAACAATTCGACCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATACAGATCCACAACGCCATGGGTTTAGGCATCTTAGCTTCTCGAACAATTCGACCAG 120
Query 61 CTTCTCGTCTTCTTCAATCACACAA-CTCCAATTTCTTCCTCCGCACCATCGTCTCCAAA 119
|||| |||||||||||||| || || ||||||||||||||||||||| |||||||| |||
Sbjct 121 CTTCACGTCTTCTTCAATCTCA-AACCTCCAATTTCTTCCTCCGCACAATCGTCTCAAAA 179
Query 120 CCAGAGCTCCAATCTCCTGAATCCGCTGCTGTCTCTGAGCCTGAGCCACCGACACAGATT 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CCAGAGCTCCAATCTCCTGAATCCGCTGCTGTCTCTGAGCCTGAGCCGCCGACACAGATT 239
Query 180 CTCCCTCCTAGAAACCCTGTAGGTGGAGCACGCGTCCATTTCTCGAATCCTGAAGATGCG 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 CTCCCTCCTAGAAACCCTGTAGGTGGAGCACGCGTCCACTTCTCGAATCCTGAAGATGCG 299
Query 240 ATCGAGGT-TTTCGTTGATGGTTACGCGGTCAAAGTTCCTAAAGGATTCACTGTTCTTCA 298
|||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATCGAGGTCTTT-GTCGATGGTTACGCGGTCAAAGTCCCTAAAGGATTCACTGTTCTTCA 358
Query 299 GGCTTGTGAGGTCGCTGGAGTTGATATTCCAAGGTTTTGTTATCATTCTCGTTTGTCTAT 358
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 359 GGCTTGTGAGGTCGCTGGAGTTGATATCCCGAGGTTTTGTTATCATTCTCGTTTATCTAT 418
Query 359 TGCTGGAAATTGTAGGATGTGTCTTGTTGAAGTCGAGAAATCTCCTAAGCCTGTAGCGTC 418
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 419 TGCTGGAAATTGCAGGATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTC 478
Query 419 TTGTGCCATGCCTGCACTTCCAGGGATGAAGATTAAGACTGACACACCGATAGCGAAGAA 478
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 479 ATGTGCCATGCCTGCGCTTCCTGGGATGAAGATTAAGACTGATACACCGATAGCTAAGAA 538
Query 479 GGCGAGGGAGGGAGTGATGGAGTTTTTGTTGATGAATCATCCTTTAGATTGCCCTATTTG 538
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 539 GGCGAGGGAGGGAGTGATGGAGTTTTTGTTGATGAATCACCCTTTGGATTGTCCTATTTG 598
Query 539 TGATCAAGGAGGAGAGTGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGACAGAGG 598
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 599 TGACCAAGGAGGAGAGTGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGATAGAGG 658
Query 599 TCGTTTTACTGAGATGAAAAGATCTGTTGTTGATAAGAACCTTGGTCCTCTTGTGAAGAC 658
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 ACGTTTTACTGAGATGAAAAGATCTGTTGTTGATAAGAATCTTGGTCCTCTTGTGAAGAC 718
Query 659 TGTTATGACTCGGTGTATCCAGTGTACAAGGTGTGTACGATTTGCTTCAGAAGTTGCTGG 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TGTTATGACTCGGTGTATCCAGTGTACAAGGTGTGTACGATTTGCTTCTGAAGTTGCTGG 778
Query 719 AGTTCAGGATCTTGGTATACTAGGTCGTGGTAGTGGAGAAGAAATTGGAACTTATGTTGA 778
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 GGTTCAGGATCTTGGTATACTAGGTCGTGGTAGTGGAGAGGAAATTGGAACTTATGTTGA 838
Query 779 AAAGCTTATGACCAGTGAACTCTCTGGAAATGTTATAGACATCTGTCCTGTTGGAGCCTT 838
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 839 AAAGCTTATGACCAGTGAACTCTCTGGAAATGTTATTGATATCTGTCCTGTTGGAGCCTT 898
Query 839 GACCTCAAAGCCCTTTGCCTTTAAAGCGAGAAACTGGGAGTTGAAAGCAACAGAAACCAT 898
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 899 GACCTCAAAGCCTTTTGCCTTTAAAGCCAGAAACTGGGAGTTGAAAGCAACAGAAACTAT 958
Query 899 TGATGTTAGTGATGCTGTTGGGTCCAACATCCGCGTTGATAGTAGAGGACCAGAAGTGAT 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 959 TGATGTTAGTGATGCTGTTGGGTCCAACATCCGTGTTGATAGTAGAGGACCAGAAGTAAT 1018
Query 959 GCGTATCATTCCACGCCTTAATGAGGATATAAACGAAGAATGGATATCTGACAAAACCCG 1018
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCGTATCATTCCACGCCTGAATGAGGATATAAACGAAGAATGGATATCTGACAAAACCCG 1078
Query 1019 ATTCTGTTATGACGGTTTGAAAAGACAAAGGTTGAGCGACCCTATGATCAGAGATTCCGA 1078
||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1079 ATTCTGTTATGACGGCCTGAAAAGACAAAGGCTGAGCGACCCTATGATCCGAGATTCCGA 1138
Query 1079 TGGACGATTCAAGGCAGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATTCA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGGACGATTCAAGGCAGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATTCA 1198
Query 1139 TCAGGTGAAACCAGATGAGATTGTTGGCGTAGCAGGTCAGCTATCTGATGCGGAATCCAT 1198
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1199 TCAGGTGAAGCCAGATGAGATTGTTGGAGTAGCAGGTCAGCTATCTGATGCGGAATCCAT 1258
Query 1199 GATGGTACTGAAGGACTTCGTTAACAGAATGGGTTCAGACAATGTCTGGTGTGAAGGAAC 1258
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1259 GATGGTACTGAAGGACTTCGTTAACAGAATGGGCTCAGACAATGTATGGTGTGAAGGAAC 1318
Query 1259 AGCTGCTGGTGTTGATGCTGATCTTAGGTATAGTTATCTGATGAACACTAGTATCAGTGG 1318
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1319 AGCTGCTGGTGTTGATGCTGATCTTAGATACAGTTATCTGATGAACACTAGCATCAGTGG 1378
Query 1319 ACTTGAGAACGCCGATCTCTTCCTTCTAATTGGTACCCAGCCTAGGGTTGAAGCTGCAAT 1378
|||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1379 ACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGCCTAGGGTGGAAGCTGCAAT 1438
Query 1379 GGTGAATGCTAGGATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGGATATGTTGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GGTGAATGCTAGGATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGGATATGTTGG 1498
Query 1439 TCCACCTGCAGAGTTCAACTACGACTGCAAACACCTCGGGACTGGGCCTGATACCCTCAA 1498
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1499 TCCACCTGCAGAGTTCAATTACGACTGCAAACACCTCGGGACTGGGCCTGATACTCTCAA 1558
Query 1499 GGAAATCGCTGAGGGACGACACCCATTCTGTGCGGCTCTCAAGAACGCCAAAAACCCTGC 1558
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1559 GGAAATTGCTGAGGGACGGCATCCATTCTGTACGGCTCTCAAGAACGCCAAAAACCCTGC 1618
Query 1559 AATCATTGTTGGTGCTGGGCTCTTCAACAGAACTGATAAAAATGCTATCCTCTCTTCTGT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AATCATTGTTGGTGCTGGGCTCTTCAACAGAACTGATAAAAATGCTATCCTCTCTTCTGT 1678
Query 1619 GGAATCCATCGCACAAGCCAACAATGTCGTCCGACCAGACTGGAACGGTCTCAACTTTCT 1678
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1679 GGAGTCCATTGCACAAGCCAACAATGTTGTCCGACCAGACTGGAACGGTCTCAACTTTCT 1738
Query 1679 CCTTCAGTATGCTGCTCAAGCGGCTGCTCTTGATCTCGGTCTCATTCAACAGTCCGCCAA 1738
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1739 CCTTCAGTATGCTGCCCAAGCGGCTGCTCTTGATCTTGGTCTCATTCAACAGTCCGCCAA 1798
Query 1739 AGCCCTCGAGTCTGCAAAATTCGTCTACTTGATGGGAGCAGACGATGTAGATGTTGAGAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1799 AGCCCTCGAGTCTGCAAAATTCGTCTACTTGATGGGAGCAGACGATGTAAATGTTGACAA 1858
Query 1799 GATTCCTAAAGACGCCTTCGTGGTTTACCAAGGACACCATGGAGACAAAGCGGTTTACCG 1858
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GATTCCTAAAGACGCCTTTGTGGTTTACCAAGGACACCATGGAGACAAAGCGGTTTACCG 1918
Query 1859 TGCAAACGTAATTCTCCCTGCATCGGCCTTCACCGAGAAAGAAGGAACCTATGAAAATAC 1918
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1919 TGCAAACGTAATTCTCCCTGCATCGGCCTTCACTGAGAAAGAAGGAACCTATGAAAATAC 1978
Query 1919 TGAAGGATTTACCCAACAGACTGTTCCAGCTGTTCCAACAGTTGGTGATGCAAGAGATGA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TGAAGGATTTACCCAACAGACTGTTCCAGCTGTTCCAACAGTTGGTGATGCAAGAGATGA 2038
Query 1979 TTGGAAGATTGTGAGAGCCTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAAT 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CTGGAAGATTGTGAGAGCCTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAAT 2098
Query 2039 CGAAGGTGTTAGATCAAGAATCAAGAGTGTTGCACCAAATCTAGTCCACACAGATGAACG 2098
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 2099 CGAAGGTGTTAGATCAAGAATAAAGAGCGTTGCACCAAATCTAGTCCACACAGATGAGCG 2158
Query 2099 AGAGCCAGCTGCTTTTGGGCCTTCATTGAAACCCGAGTGCAAGGAGACAATGAGCGCAAC 2158
|||||||||||||||||||||||||||||| || |||||||||||| |||||||| ||||
Sbjct 2159 AGAGCCAGCTGCTTTTGGGCCTTCATTGAAGCCTGAGTGCAAGGAGGCAATGAGCACAAC 2218
Query 2159 ACCATTCCAACCCGTGGTTGAGAATTTTTACATGACAAACTCGATCACAAGAGCATCAAA 2218
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2219 ACCGTTCCAAACCGTGGTTGAGAACTTTTACATGACAAACTCGATCACAAGAGCATCAAA 2278
Query 2219 GATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2251
|||||||||||||||||||||||||||||||||
Sbjct 2279 GATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2311
Score = 211 bits (114), Expect = 2e-53
Identities = 119/121 (98%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 2347 ACCTTTTGTGTAAGCC-GAGTATCACTGTATCTCGGGTTTAGCTTGCGGTGAAATCTATA 2405
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2315 ACCTTTTGTTTAAGCCTGAGTATCACTGTATCTCGGGTTTAGCTTGCGGTGAAATCTATA 2374
Query 2406 AGCAATTTGCAATAAGCACATTGTTAGATTCAAAACTTTGCAGTGTTAATTGGATGCTTT 2465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AGCAATTTGCAATAAGCACATTGTTAGATTCAAAACTTTGCAGTGTTAATTGGATGCTTT 2434
Query 2466 G 2466
|
Sbjct 2435 G 2435
> AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomerase
3 | chr1:10297877-10300005 REVERSE LENGTH=1638
Length=1638
Score = 222 bits (120), Expect = 1e-56
Identities = 165/187 (88%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 2073 CCAAATCTAGTCCACACAGATGAACGAGAGCCAGCTGCTTTTGGGCCTTCATTGAAACCC 2132
||||| |||||||||||||| || |||||| ||||||||||||| ||||| ||||| ||
Sbjct 1186 CCAAACCTAGTCCACACAGACGAGCGAGAGGCAGCTGCTTTTGGCCCTTCCTTGAAGCCA 1245
Query 2133 GAGTGCAAGGAGACAATGAG-CGCAACACCATTCCAACCCGTGGTTGAGAATTTTTACAT 2191
|||| ||| |||||||| || | ||||||| ||| |||||||||||||||||||||||||
Sbjct 1246 GAGTCCAATGAGACAAT-AGACACAACACCTTTCAAACCCGTGGTTGAGAATTTTTACAT 1304
Query 2192 GACAAACTCGATCACAAGAGCATCAAAGATCATGGCGCAGTGCAGTGCCGTGCTCTTGAA 2251
||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| | ||
Sbjct 1305 GACAAACTCAATCACAAGAGCCTCAAAGATCATGGCTCAGTGCAGTGCTTTGCTCCTCAA 1364
Query 2252 GAAGTGA 2258
|||||||
Sbjct 1365 GAAGTGA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122357173977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5