BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947406
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2584 0.0
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)... 60.2 6e-08
> AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=1653
Length=1653
Score = 2584 bits (1399), Expect = 0.0
Identities = 1571/1654 (95%), Gaps = 11/1654 (1%)
Strand=Plus/Plus
Query 21 ATGATCCAGAGATTATCTCATCCTTCTTTGCTCTCACTCGAAACACTCTTAAAGCTCTGC 80
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 ATGATCCAGAGATTATCTCATCCTTCTTTGCTCTCACTCGAAACCCTCTTCAAGCTCTGC 60
Query 81 AAATCTGAGATTCATCTTAATCAAATCCATGCCCGAATCATCCGCAAAGGTCTTGAACAA 140
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCCGAGATTCATCTTAATCAAATCCATGCCCGAATCATCCGCAAAGGTCTTGAACAA 120
Query 141 GACCAGAatcttatctc-a-----atct-tt-atc-tcttcgtcttcttcatctctctct 191
||||||||||| ||||| | |||| || || |||||||||||||| |||||||||
Sbjct 121 GACCAGAATCTCATCTCAATCTTCATCTCTTCGTCTTCTTCGTCTTCTTCGTCTCTCTCT 180
Query 192 tactcttcctctGTTTTTGAACGTGTTCCTTAC-CCTGGAACGTATCTTTGGAATCATTT 250
||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||
Sbjct 181 TACTCTTCCTCTGTTTTTGAACGTGTTCCTT-CTCCTGGAACTTATCTCTGGAATCATTT 239
Query 251 GATCAAAGGGTACTCGAATAAGTTTCTCTTCTTTGAGACGGTTTCGCTTCTAATGCGTAT 310
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 240 GATTAAAGGGTACTCGAATAAGTTTCTCTTCTTTGAGACTGTTTCGATTCTAATGCGGAT 299
Query 311 GATGAGAACAGGTTTTGCGAGACCTGATGAGTATACTTTTCCTTTGGTTATGAAAGTTTG 370
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATGAGAACAGGTTTAGCTAGACCTGATGAGTATACTTTTCCTTTGGTTATGAAAGTTTG 359
Query 371 TTCTAATAATGCAGAGTTTCGTGTTGGTTCAACGGTTCATGGGTTGGTTTTGAGAATTGG 430
|||||| |||| | || |||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 360 TTCTAACAATGGACAGGTTCGTGTTGGTTCATCGGTTCATGGGTTAGTTTTGAGAATTGG 419
Query 431 GTTTGATAAAGATGTTGTTTTGGGTACAAGTTTTGTTGATTTTTATGGTAAATGTAAGGA 490
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGATAAAGATGTTGTTGTGGGTACAAGTTTTGTTGATTTTTATGGTAAATGTAAGGA 479
Query 491 TTTGTGTAGTGCACGTAAGGTGTTTGGTGAAATGCCTGAGAGAAATGTTGTTTCTTGGAC 550
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 480 TTTGTTTAGTGCACGTAAGGTGTTTGGGGAAATGCCTGAGAGAAATGCTGTTTCTTGGAC 539
Query 551 GGCTTTGATTGTTGCGTATGTAAAATCTGGGGAGTTGGAGGAAGCGAAGAGGATGTTTGA 610
|||||| ||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 540 AGCTTTGGTTGTTGCCTATGTGAAATCTGGGGAGTTAGAGGAAGCGAAGAGCATGTTTGA 599
Query 611 TCTTATGCCTGAGCGTAATTTGGGAACTTGGAATGCTTTGGTTGATGGGTTGGTGAAATC 670
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 600 TCTTATGCCTGAGCGTAATTTGGGATCTTGGAATGCTTTGGTTGATGGGTTGGTTAAATC 659
Query 671 GGGAGATTTGGTTAATGCTAGGAAGTTGTTTGATGAAATGCCTAAGAGAGATATTATTTC 730
|| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 660 TGGTGATTTGGTTAATGCTAAGAAGTTGTTTGATGAAATGCCTAAGAGAGATATAATTTC 719
Query 731 GTATACTTCTATGATTGATGGATATGCTAAAGGTGGTGATATGGTTTCTGCGAGGGATTT 790
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GTATACCTCTATGATTGATGGGTATGCTAAAGGTGGTGATATGGTTTCTGCAAGGGATTT 779
Query 791 GTTTGAGAAAGCGAGGGGTGTTGATGTTAGGGCATGGTCAGCTTTAATATTGGGTTATGC 850
||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 780 GTTTGAGGAAGCGAGGGGTGTTGATGTTAGAGCATGGTCAGCTTTGATATTGGGTTATGC 839
Query 851 ACAGAACGGTCAGCCGAATGAGGCCTTTAAGGTTTTTAGCGAAATGTGTGCGAAGAATGT 910
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 ACAGAACGGTCAGCCGAATGAGGCTTTTAAGGTTTTTAGCGAAATGTGTGCGAAGAATGT 899
Query 911 TAAACCTGATGAGTTTATAATGGTGGGTTTGATGTCAGCTTGTTCTCAGATGGGTTGTTT 970
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAAACCTGATGAGTTTATAATGGTGGGTTTGATGTCAGCTTGTTCTCAGATGGGTTGTTT 959
Query 971 TGAATTATGTGAAAAGGTTGATTCTTATCTGCACCAAAGCATGAATAAATTTTCTAGTCA 1030
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 960 TGAGTTATGTGAAAAGGTTGATTCTTATCTGCACCAAAGGATGAATAAGTTTTCTAGTCA 1019
Query 1031 TTATGTTATACCTGCTTTGATAGACATGAATGCCAAGTGTGGCCACATGGACAGAGCAGC 1090
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTATGTTGTACCTGCTTTGATAGACATGAATGCCAAGTGTGGCCACATGGACAGAGCAGC 1079
Query 1091 TAAGTTGTTTGAAGAGATGCCTCAGCGAGATCTTGTTTCATACTGTTCGATGATGGAAGG 1150
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TAAGTTGTTTGAAGAGATGCCTCAGCGAGATCTTGTTTCATATTGTTCGATGATGGAAGG 1139
Query 1151 AATGGCTATTCATGGGTGTGGAAGTGAAGCTGTTCGACTGTTTGAGAAAATGGTAGACGA 1210
|||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 AATGGCGATCCACGGGTGTGGAAGTGAAGCTATTCGACTGTTTGAGAAAATGGTAGACGA 1199
Query 1211 AGGTATTGTTCCCGATGAAGTTGCCTTCACAGTAATATTGAAAGTTTGTAGCCAGTCCAG 1270
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1200 AGGTATTGTTCCTGATGAAGTTGCCTTCACAGTAATATTGAAAGTTTGTGGCCAATCCAG 1259
Query 1271 GCTTGTTGAGGAGGGCTTAAGGTATTTCGAGTTAATGCGAAAGGAGTATTCAATTTTGGC 1330
||||||||||||||| || |||||||||||||||||||||||| | ||||| ||||||||
Sbjct 1260 GCTTGTTGAGGAGGGATTGAGGTATTTCGAGTTAATGCGAAAGAAATATTCTATTTTGGC 1319
Query 1331 ATCTCCTGATCATTATTCATGCATTGTGAATCTTCTTAGTCGGACAGGAAAGCTTAAAGA 1390
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1320 ATCTCCTGATCATTATTCATGCATTGTGAATCTTCTTAGCCGGACAGGGAAGCTTAAAGA 1379
Query 1391 GGCTTATGAGCTTATCAAATCCATGCCCTTTGAAGCTCATGCTAGTGCTTGGGGTTCGCT 1450
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 GGCCTATGAGCTTATCAAATCCATGCCCTTTGAAGCTCATGCTAGTGCTTGGGGTTCACT 1439
Query 1451 TTTGGGTGGTTGTAGTCTACATGGGAATACTGAGATAGCAGAGGTAGTTGCAAGGCAACT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 TTTGGGTGGTTGTAGTCTACATGGGAATACTGAGATAGCAGAGGTAGTTGCAAGGCACCT 1499
Query 1511 CTTTGAGCTTGAACCACAAAGTGCCGGTAGTTACGTGCTTCTGTCAAATATATATGCAGC 1570
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 CTTTGAGCTTGAACCACAAAGTGCCGGTAGTTACGTGCTTCTGTCAAATATTTATGCAGC 1559
Query 1571 TTTAGACCGGTGGGCGGATCTTGCTCATCTTAGGGACAAAATGAACGAGAATGGTATTAA 1630
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 TTTAGACCGGTGGACGGATGTTGCTCATCTTAGGGACAAAATGAACGAAAATGGTATTAC 1619
Query 1631 AAAGATTTGTGGCCGAAGTTGGATAATTCGATAA 1664
|||||||||||||||||||||||||| |||||||
Sbjct 1620 AAAGATTTGTGGCCGAAGTTGGATAAGTCGATAA 1653
> AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:15884001-15886388 REVERSE LENGTH=2388
Length=2388
Score = 60.2 bits (32), Expect = 6e-08
Identities = 44/50 (88%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 499 GTGCACGTAAGGTGTTTGGTGAAATGCCTGAGAGAAATGTTGTTTCTTGG 548
||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct 280 GTGCACGCAAGCTGTTCGATTTAATGCCTGAGAGAAATGTTGTTTCTTGG 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5