BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947412

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37620.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   518    2e-146


> AT5G37620.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr5:14942396-14944354 REVERSE LENGTH=1959
Length=1959

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 348/381 (91%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  22   ATGGAAAAAACAGAGTTACCCATTCACAAACATCCTTTGTTAACTATAACTCGttttttt  81
            |||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||| 
Sbjct  1    ATGGAAAAAATAGAGCTACCAATTCACAAACATCCTTTGTTACCTATAACTCGTTTTTTC  60

Query  82   tCTCGTCGCGGCTGTAACGGATGTGGATCTTATGGTTACATCTACGGAGGCTACCGTTGC  141
            ||||||| ||| |||||||| ||||| ||| |||||||||| ||||||||||||| ||||
Sbjct  61   TCTCGTCACGGTTGTAACGGGTGTGGCTCTGATGGTTACATTTACGGAGGCTACCATTGC  120

Query  142  AATGAGTTGGGGTGTGAGACTCCTGCGTTTCATAGAGAGTGTGCTGAGTCTTTACAAGAA  201
            |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  AATGAGTTAGGCTGTGAGACTCCTGCGTTTCATAGAGAGTGTGCTGAGTCTTTACAGGAA  180

Query  202  ATAAAGCACTTCTCTCATCCCGATCATCCTCTCAATCTTCGCCTAAACGACAAAGCATCT  261
            ||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct  181  ATAAAGCACTTCTCTCACCCCGATCATCCTCTTAATCTGCGCCTAAATGACAAAGCATCT  240

Query  262  ACATGTAATCGATGTGGAATACATCTGTTTA-AAGAAAGCTATATCTATATATGTTCAAT  320
            |||||||||||||||||||| |||||| ||  || ||| |||||||||| ||||||||||
Sbjct  241  ACATGTAATCGATGTGGAATTCATCTGCTTCGAA-AAACCTATATCTATGTATGTTCAAT  299

Query  321  GTGTGACTTCAAGTTGGATTTACACTGTGCGAAAGGAAGCTGCTCCACTTCCTATTCTTG  380
             ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct  300  CTGTGACTTCAAGTTGGATTTACATTGTGCGAA-GGATGCTGCTCCACTTCCTATTCTTG  358

Query  381  AAAACTCCAATGTGCACGAGC  401
            |||||| |||| | |||||||
Sbjct  359  AAAACTACAATCTCCACGAGC  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5