BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947419
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14550.1 | Symbols: GGPS3 | geranylgeranyl pyrophosphate syn... 420 9e-117
AT3G14510.1 | Symbols: | Polyprenyl synthetase family protein ... 409 2e-113
AT3G14530.1 | Symbols: | Terpenoid synthases superfamily prote... 375 2e-103
> AT3G14550.1 | Symbols: GGPS3 | geranylgeranyl pyrophosphate synthase
3 | chr3:4884566-4885982 REVERSE LENGTH=1308
Length=1308
Score = 420 bits (227), Expect = 9e-117
Identities = 436/531 (82%), Gaps = 38/531 (7%)
Strand=Plus/Plus
Query 88 GGACAAAAGGGTTAGTAGCAGGGCAAGTAACT-GACCTAAG-CAGCGAAAGATTGAATCC 145
|||| | |||| |||| || || ||| | | | ||||| || |||||||||| |||||||
Sbjct 669 GGACTACAGGGCTAGTTGCTGGACAAATGA-TAGACCT-AGCCAGCGAAAGACTGAATCC 726
Query 146 ACACGACGCTGGATTGGAGCGTCTAGAATTAATCCATCTCCACAAAACGGCGGCATTGTT 205
| || | | ||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 727 AGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCATTGTT 786
Query 206 GGAGGAAGCGGCTATTTTAGGGGTCATAATGGGAGATGGAACAGAGGAGGAGATCGAGAA 265
||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||| ||
Sbjct 787 GGAGGCAGCGGCGGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGGAAGAGATCGA-AA 845
Query 266 A-CTTAGAAAGTATGCGAGATGTATTGGCCTATTGTTTCAAGTGGTTGATGACATTCTTG 324
| |||||||||||||| || |||||||| ||| ||||||| ||||||||||||||||| |
Sbjct 846 AGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTGGTTGATGACATTCTCG 905
Query 325 ACGTAACGGAATCTACTGAGGATTTGGGTAAGACTGTC-GGAAAAGACTTAAGAGCAACC 383
||||||| ||||||||||||| ||||| ||||||| | ||||||||| |||
Sbjct 906 ACGTAACAAAATCTACTGAGGAATTGGGAAAGACTG-CAGGAAAAGACGTAA-------- 956
Query 384 ACAATGGTTGCTCTAATGGCCGGAAAGCTGACGTATCCAAGGCTAATAGGTTTGGAGAGA 443
||| || || ||||||||||||||||||||| |||||||||||||||
Sbjct 957 ----TGG---CT-----GG----AAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGA 1000
Query 444 TCGAGGGCAGTTGCAGAGAAACTGAACAGAGAAGCAGAGGAACAACTTCTAAGGTTTCAT 503
|| | || ||||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 1001 TCAAAGGAAGTTGCAGAGAAACTGAGGAGAGAAGCAGAGGAACAACTTCTAGGGTTTGAT 1060
Query 504 CGGAA-TAAGGCAGCGCCTCTGATGGCTCTTGCTAGCTACATTGCT--CTGATATTT-TG 559
| || |||||| ||||||||| ||||||||||||||||||| ||| | || | ||
Sbjct 1061 CC-AAGTAAGGCGGCGCCTCTGGTGGCTCTTGCTAGCTACATCGCTTGCAGACACAACTG 1119
Query 560 TATCAACAGATCATATCCTCAACGCATCTAATCTCCTAACACGTCCCTTTA 610
|| || |||||||||||||| ||||| |||||||||||| |||| ||||
Sbjct 1120 AATGGACTGATCATATCCTCAATGCATC-AATCTCCTAACAAGTCCTTTTA 1169
Score = 84.2 bits (45), Expect = 1e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 35 AGCACATGACGGTTGCGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 85
||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 588 AGCACATGACGTTTGTGTCGAGTGGGTTGGTCGCTCCCGAGAGGATGATTC 638
> AT3G14510.1 | Symbols: | Polyprenyl synthetase family protein
| chr3:4867378-4868414 REVERSE LENGTH=964
Length=964
Score = 409 bits (221), Expect = 2e-113
Identities = 386/461 (84%), Gaps = 30/461 (7%)
Strand=Plus/Plus
Query 88 GGACAAAAGGGTTAGTAGCAGGGCAAGTAACTGACCTAAGCAGCGAAAGATTGAATCCAC 147
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 513 GGACAAAAGGGTTAGTGGCAGGGCAAGTGGTTGACCTAAGCAGCGAAAGATTGAATCCAC 572
Query 148 ACGACGCTGGATTGGAGCGTCTAGAATTAATCCATCTCCACAAAACGGCGGCATTGTTGG 207
|||||| |||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 573 ACGACGTTGGATTGGAGCGTCTAGAGTTCATCCACCTCCACAAAACGGCGGCGTTGTTGG 632
Query 208 AGGAAGCGGCTATTTTAGGGGTCATAATGGGAGATGGAACAGAGGAGGAGATCGAGAAA- 266
||| ||| || || |||| | ||||||||||| |||||||||||| |||||||| |||
Sbjct 633 AGGCAGCAGCGGTTATAGGTGCCATAATGGGAGGTGGAACAGAGGAAGAGATCGA-AAAG 691
Query 267 CTTAGAAAGTATGCGAGATGTATTGGCCTATTGTTTCAAGTGGTTGATGACATTCTTGAC 326
|||||||||||||| || |||||||| ||||||||||| || |||||||| |||||||||
Sbjct 692 CTTAGAAAGTATGCTAGGTGTATTGGACTATTGTTTCAGGTTGTTGATGATATTCTTGAC 751
Query 327 GTAACGGAATCTACTGAGGATTTGGGTAAGACTGTC-GGAAAAGACTTAAGAGCAACCAC 385
||||| ||||||| ||||| ||||| ||||||| | ||||||||| |||
Sbjct 752 GTAACAAAATCTACAGAGGAATTGGGAAAGACTG-CAGGAAAAGACGTAA---------- 800
Query 386 AATGGTTGCTCTAATGGCCGGAAAGCTGACGTATCCAAGGCTAATAGGTTTGGAGAGATC 445
||| || || ||||||||||||||||||||| |||||||||||||||||
Sbjct 801 --TGG---CT-----GG----AAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGAGATC 846
Query 446 GAGGGCAGTTGCAGAGAAACTGAACAGAGAAGCAGAGGAACAACTTCTAAGGTTTCA-TC 504
|||| |||||| |||||||||| ||||||||| ||||| || |||||| ||||| | ||
Sbjct 847 CAGGGAAGTTGCGGAGAAACTGAGCAGAGAAGCCGAGGAGCAGCTTCTAGGGTTTGAGTC 906
Query 505 GGAATAAGGCAGCGCCTCTGATGGCTCTTGCTAGCTACATT 545
|| ||||| ||||||||| | ||||||||||||||||||
Sbjct 907 TGAC-AAGGCGGCGCCTCTGGTAGCTCTTGCTAGCTACATT 946
> AT3G14530.1 | Symbols: | Terpenoid synthases superfamily protein
| chr3:4879112-4880448 REVERSE LENGTH=1264
Length=1264
Score = 375 bits (203), Expect = 2e-103
Identities = 384/466 (82%), Gaps = 34/466 (7%)
Strand=Plus/Plus
Query 88 GGACAAAAGGGTTAGTAGCAGGGCAAGTAACT-GACCTAAG-CAGCGAAAGATTGAATCC 145
|||| | |||| |||| || || ||| | | | ||||| || ||||||||||||||||||
Sbjct 632 GGACTACAGGGCTAGTTGCTGGACAAATGA-TAGACCT-AGCCAGCGAAAGATTGAATCC 689
Query 146 ACACGACGCTGGATTGGAGCGTCTAGAATTAATCCATCTCCACAAAACGGCGGCATTGTT 205
| || | | ||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 690 AGACAAGGTTGGATTGGAGCATCTAGAGTTCATCCATCTCCACAAAACGGCGGCATTGTT 749
Query 206 GGAGGAAGCGGCTA-TTTTAGGGGTCATAATGGGAGATGGAACAGAGGAGGAGATCGAGA 264
||||| |||||| | |||||||||| |||||||||| |||||||||| | || ||||| |
Sbjct 750 GGAGGCAGCGGC-AGTTTTAGGGGTTATAATGGGAGGTGGAACAGAGCAAGAAATCGA-A 807
Query 265 AA-CTTAGAAAGTATGCGAGATGTATTGGCCTATTGTTTCAAGTGGTTGATGACATTCTT 323
|| |||||||||||||| || |||||||| ||| ||||||| || ||||||||||||||
Sbjct 808 AAGCTTAGAAAGTATGCTAGGTGTATTGGACTACTGTTTCAGGTTGTTGATGACATTCTC 867
Query 324 GACGTAACGGAATCTACTGAGGATTTGGGTAAGACTGTCGGAAAAGACTTAAGAGCAACC 383
|||||||| ||||||||||||| ||||||||||| | |||||||||| |||
Sbjct 868 GACGTAACAAAATCTACTGAGGAATTGGGTAAGACAGCCGGAAAAGACGTAA-------- 919
Query 384 ACAATGGTTGCTCTAATGGCCGGAAAGCTGACGTATCCAAGGCTAATAGGTTTGGAGAGA 443
||| | | || ||||||||||||||||||||| |||||||||||| ||
Sbjct 920 ----TGG---C-C----GG----AAAGCTGACGTATCCAAGGCTGATAGGTTTGGAGGGA 963
Query 444 TCGAGGGCAGTTGCAGAGAAACTGAACAGAGAAGCAGAGGAACAACTTCTAAGGTTTCAT 503
|| |||| ||||||||||||||||| ||||||||||||||||| |||||| ||||| ||
Sbjct 964 TCCAGGGAAGTTGCAGAGAAACTGAGGAGAGAAGCAGAGGAACAGCTTCTAGGGTTTGAT 1023
Query 504 CGGAA-TAAGGCAGCGCCTCTGATGGCTCTTGCTAGCTACATTGCT 548
| || |||||| |||||| || |||||||||| ||||||||||||
Sbjct 1024 CC-AAGTAAGGCGGCGCCTTTGGTGGCTCTTGCCAGCTACATTGCT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5