BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947423
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37680.1 | Symbols: ATARLA1A, ARLA1A | ADP-ribosylation fact... 992 0.0
> AT5G37680.1 | Symbols: ATARLA1A, ARLA1A | ADP-ribosylation factor-like
A1A | chr5:14969596-14971312 REVERSE LENGTH=970
Length=970
Score = 992 bits (537), Expect = 0.0
Identities = 576/595 (97%), Gaps = 2/595 (0%)
Strand=Plus/Plus
Query 1 AAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTCAATTGGCTCAGAAGCT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 195 AAAAGATCAAATCTTTGGAGATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGCT 254
Query 61 TGTTCTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTT 314
Query 121 CTCTTGTCAATGCCATTGCTACTGGAGGTTATAGTGAAGATATGATACCAACTGTAGGAT 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 315 CTCTTGTCAATGCCATTGCTACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGAT 374
Query 181 TTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGC 434
Query 241 AACGAAGGTTTCGTACCATGTGGGAACGTTATTGTCGTGGTGTTTCCGCCATTGTATATG 300
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 435 AACGAAGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTATATG 494
Query 301 TGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCT-C 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 495 TGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCTGC 554
Query 360 TTAACGAAACCGTCTTTAAATGGAATTCCTCTTCTGATTCTCGGCAACAAAATAGATAAG 419
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 555 T-AACGAAACCGTCTTTAAATGGCATTCCTCTTCTGATTCTTGGCAACAAAATCGATAAG 613
Query 420 TCTGAAGCTCTCTCCAAGCAAGCTTTGGTTGATCAACTAGGGCTTGATTCTGTAGCAGAC 479
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 614 TCTGAAGCTCTCTCTAAGCAAGCTTTGGTTGATCAACTAGGGCTTGAATCTGTAACAGAC 673
Query 480 AGAGAGGTTTGCTGTTACATGATCTCGTGTAAGGACTCGATAAACATTGATGCGGTCATC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGAGAGGTTTGCTGTTACATGATCTCGTGTAAGGACTCGATAAACATTGATGCGGTCATC 733
Query 540 GATTGGCTCATTAAGCACTCGAGAACCGCTACATAGACAAACACAACAAGCTCAT 594
|||||||||||||||||||||||||| || ||||| ||| |||||||||||||||
Sbjct 734 GATTGGCTCATTAAGCACTCGAGAACTGCCACATAAACAGACACAACAAGCTCAT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5