BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947437
Length=352
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01660.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 292 1e-78
> AT3G01660.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:245478-246508 FORWARD
LENGTH=952
Length=952
Score = 292 bits (158), Expect = 1e-78
Identities = 192/208 (92%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 52 CATGGGTTAGCCATCTTCAAGAAGAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTA 111
||||||| |||||||||| ||||||||| |||||||||||||| || |||||||||||||
Sbjct 365 CATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTA 424
Query 112 ACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACG 171
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 425 ACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATG 484
Query 172 AAGATCAGAAATTCGAGTTCGAAGACAAGTCTTTCGACGCTGTTTATGTG--CTGTCGGT 229
|||||||||| ||||||||||||||||||| |||||||||||||| |||| |||| |||
Sbjct 485 AAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT-TGTGTTCTGTTGGT 543
Query 230 GTACAGTATCTACAACAACCCGATAAAG 257
||||||||||||||||||||||| ||||
Sbjct 544 GTACAGTATCTACAACAACCCGA-AAAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16487821672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5