BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947442
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5... 678 0.0
AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-2477... 472 2e-132
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 388 2e-107
> AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5:15004527-15006205
REVERSE LENGTH=858
Length=858
Score = 678 bits (367), Expect = 0.0
Identities = 387/397 (97%), Gaps = 0/397 (0%)
Strand=Plus/Plus
Query 99 ATGGTTGCATCACAACCAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 158
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGTTGCATCACAACAAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 299
Query 159 CAGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTG 218
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 300 CAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATCG 359
Query 219 ATTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAG 278
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 ACTTCCCCGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCCGAGGAAG 419
Query 279 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 479
Query 339 AGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 480 AGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAAGAAGTGGAAGAGA 539
Query 399 TGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAGA 458
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCAAGA 599
Query 459 TTATGATGGCTAAGTGATTTGATAAAGGTGATGATGA 495
|||||||||||||||||||||||||||||||||||||
Sbjct 600 TTATGATGGCTAAGTGATTTGATAAAGGTGATGATGA 636
Score = 187 bits (101), Expect = 8e-47
Identities = 104/105 (99%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 1 AGAAAGACGATTTCTCGAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AGAAAGACGATTTCTCGAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGA 123
Query 61 ATTCAAGGAAGCTTTTAGCCTCTTCGACAAAGATGGCGATG-GTT 104
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 124 ATTCAAGGAAGCTTTTAGCCTCTTCGACAAAGATGGCGATGTGTT 168
> AT1G66410.2 | Symbols: CAM4 | calmodulin 4 | chr1:24774260-24775984
REVERSE LENGTH=850
Length=850
Score = 472 bits (255), Expect = 2e-132
Identities = 343/386 (89%), Gaps = 3/386 (1%)
Strand=Plus/Plus
Query 100 TGGTTGCATCACAACCAAA-GAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 158
|||||||||||| | |||| |||||||||||||| ||||| |||||||| || |||||||
Sbjct 304 TGGTTGCATCACCA-CAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACCCAA 362
Query 159 CAGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTG 218
|||| |||||||| ||||||||||||||||||||||| || ||||||||||| || ||||
Sbjct 363 CAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGACGCTGATGGAAACGGAACCATTG 422
Query 219 ATTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAG 278
| ||||| |||||| | ||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 423 ACTTCCCTGAGTTCTTAAACCTAATGGCTAAAAAGATGAAGGACACAGACTCGGAGGAAG 482
Query 279 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 338
|||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 483 AGCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGTTTCATATCCGCTGCAG 542
Query 339 AGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398
|||| |||||||||||||| ||||| |||||||| || |||||||| || || || ||||
Sbjct 543 AGCTTCGCCATGTGATGACGAATCTAGGTGAGAAACTGACTGATGAAGAGGTCGAGGAGA 602
Query 399 TGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAGA 458
|||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 603 TGATTCGTGAAGCAGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTTGTCAAGA 662
Query 459 TTATGATGGCTAAGTGATT-TGATAA 483
|||||||||||||||||| ||||||
Sbjct 663 TTATGATGGCTAAGTGATGATGATAA 688
Score = 119 bits (64), Expect = 3e-26
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 17 GAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGAATTCAAGGAAGCTTTT 76
|||||||||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct 191 GAAGAAGCTATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGCTTTT 250
Query 77 AGCCTCTTCGACAAAGATGGCGATG 101
|||||||||||||||||||| ||||
Sbjct 251 AGCCTCTTCGACAAAGATGGAGATG 275
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 388 bits (210), Expect = 2e-107
Identities = 323/378 (85%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 101 GGTTGCATCACAACCAAA-GAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAAC 159
|||||||| || | |||| ||||| || || || |||||||| || || |||||||||||
Sbjct 262 GGTTGCATTACCA-CAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAAC 320
Query 160 AGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTGA 219
|| ||||||||||| |||||||||||||| |||||||| ||||| ||||| || |||||
Sbjct 321 CGAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGA 380
Query 220 TTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAGA 279
|||||| |||||| ||||||| ||||||| ||| ||||| ||||||||||| ||||||||
Sbjct 381 TTTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGA 440
Query 280 GCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTGA 339
|| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 441 ACTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA 500
Query 340 GCT-ACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398
| | | ||||||||||| || || || |||||||| |||||||| |||||||| ||||
Sbjct 501 ATTGA-GACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGA 559
Query 399 TGATCC-GTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAG 457
|||| | || |||||||||||||| ||||||||||| ||||| || |||||||| |||
Sbjct 560 TGATTAAG-GAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAG 618
Query 458 ATTATGATGGCTAAGTGA 475
|||||||||||||||||
Sbjct 619 GTTATGATGGCTAAGTGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5