BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947448

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57100.1 | Symbols:  | Protein of unknown function (DUF677) ...   381    2e-105


> AT3G57100.1 | Symbols:  | Protein of unknown function (DUF677) 
| chr3:21133013-21134482 REVERSE LENGTH=1470
Length=1470

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 281/317 (89%), Gaps = 6/317 (2%)
 Strand=Plus/Plus

Query  32    CATGAGTTCAATGGAAAGAGAAACGATCGTGGCTCTCAAACAAATGGAGAAAAATAGTAA  91
             |||||||||||||||||||| ||  |||||||||||||| ||| ||||||||| ||||||
Sbjct  921   CATGAGTTCAATGGAAAGAGGAATTATCGTGGCTCTCAAGCAAGTGGAGAAAATTAGTAA  980

Query  92    CCTCGTGAGTCGATTGGAGACTGTTGAG-GGATCGATTTGTTTGACTGCGAAGTTTGCCG  150
              |||||||||||||||||| |||| ||| || || ||| ||||||| ||| ||||||| |
Sbjct  981   ACTCGTGAGTCGATTGGAGTCTGTGGAGAGG-TCAATTAGTTTGACGGCGGAGTTTGCTG  1039

Query  151   TTAAGAAAAGGTCTTGGGTGATTGTAGCTATG-GTAGAAATGGAGGAGGAACGGAAGAGG  209
             ||||||||||||||| |||| ||||||||||| | |||  |||| |||||||||||||||
Sbjct  1040  TTAAGAAAAGGTCTTCGGTGGTTGTAGCTATGAG-AGAGGTGGAAGAGGAACGGAAGAGG  1098

Query  210   TTGAAGTCAACTCTCGTTGACCTCGACAGAGAGACCGGGA-TGTGCCATTGTTGTGCTTT  268
             ||||||||||||||||||||||| |||||||||| | ||| | ||| || ||| ||||  
Sbjct  1099  TTGAAGTCAACTCTCGTTGACCTAGACAGAGAGA-CTGGACTTTGCAATGGTTTTGCTCA  1157

Query  269   GTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAGTTTCTTTCTCGTGGCGACAAGAA  328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1158  GTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAGTTTCTTTCTCGTGGCGACAAGAG  1217

Query  329   CTCGAAATAGTTGATTT  345
             ||| ||||||||| |||
Sbjct  1218  CTCCAAATAGTTGTTTT  1234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16789428166


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5