BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947463
Length=269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative ... 344 2e-94
> AT5G05560.1 | Symbols: EMB2771 | E3 ubiquitin ligase, putative
| chr5:1641452-1654756 FORWARD LENGTH=5108
Length=5108
Score = 344 bits (186), Expect = 2e-94
Identities = 232/253 (92%), Gaps = 7/253 (3%)
Strand=Plus/Plus
Query 1 AGAGGGGGAAGTTGAACATAATGAAGGACTACGATGAGAGAACAATTTGGACAAGTGACC 60
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 AGAGGGGGAAGTTGACCATAATGAAGGACTACGATGAGAGGACAATTTGGACAAGTGACC 715
Query 61 GTCTACCTCTTATGACGTCATATAACAAAGGCAAGATGCAACATTCTGTGTGGACAGCCG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 716 GTCTACCTCTTATGACGTCGTATAACAAAGGCAAGATGCAACATTCTGTGTGGGCGGCCG 775
Query 121 AATTTATAGATTCAAACCTTGAAGCTTCTGCTTCATGTTCAAGCGGTGTTGTTCCTGATG 180
|||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 776 AATTTATAGAGTCAAACCTTGAAGCTTCTGCGTCATGTTCAAGCGGCATTGTTCCTGATG 835
Query 181 CTGTTTTCCCAAAGCGGGT--CG---C--AGAATATGGCAAGCCAAAGGTGCTAAGAAAG 233
||||| || | |||||||| | | |||||||||||||| ||||||||||||||||
Sbjct 836 CTGTTCTCTCGAAGCGGGTTTCTTTTCGTAGAATATGGCAAGCGAAAGGTGCTAAGAAAG 895
Query 234 CTGCATCTAAGGT 246
|||||||||||||
Sbjct 896 CTGCATCTAAGGT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12315598505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5