BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947464
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 904 0.0
AT5G24910.1 | Symbols: CYP714A1 | cytochrome P450, family 714, ... 165 9e-40
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 904 bits (489), Expect = 0.0
Identities = 589/638 (92%), Gaps = 4/638 (1%)
Strand=Plus/Plus
Query 543 GCAGCGAAAGAAAGAG-TTTTAAATGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 601
|||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1158 GCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 1217
Query 602 CATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGATATATGAGTT 661
| | ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1218 CCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATATGAGTT 1277
Query 662 AGTGCTAAATGGTAGCTTGAACTCCCACCTCTTTGGCAAAAGACCCCATTTACTTTCTTG 721
||| | |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1278 AGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTTTCTTG 1337
Query 722 GGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 781
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 1397
Query 782 ATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGCAATATAATGCTTGACAGTGA 841
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1398 ATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGACAGTGA 1457
Query 842 TTTCAATGTAAAGTTAGGTCATTTCGGTTTGGCTCGGGTTATGAACCATGAACATGGTTC 901
|||||||||||||||||| ||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 1458 ATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTTGGTTC 1517
Query 902 CCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCACATGAATATGTAACGAAAGG 961
||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1518 CCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATGAAAGG 1577
Query 962 AAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATTGTCAC 1021
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATTGTCAC 1637
Query 1022 AGGGAGAAAATCGCTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAGT-A--ATGA 1078
||||||||||||||||||||| || |||||||||||||||||| |||||||| | ||||
Sbjct 1638 AGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAGTGATGATGA 1697
Query 1079 GAAGAGTCTTGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAAGTGATGACTTCGTC 1138
||||||||| ||||||||||||||| | |||||||||||||||||| |||| ||||| |
Sbjct 1698 GAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAACTGATCACTTCATG 1757
Query 1139 TGTTGATGAGAAATAGGGTAATGAATTCGATAATAAAG 1176
||||||||| |||| |||| | || ||||| || ||||
Sbjct 1758 TGTTGATGACAAATTGGGTGAGGATTTCGACAAGAAAG 1795
Score = 381 bits (206), Expect = 8e-105
Identities = 293/332 (88%), Gaps = 17/332 (5%)
Strand=Plus/Plus
Query 237 GAGAAGTTCAAGCCTTTCTTACATCATCGACCTCGC-AA------ACCATCAGAAGTAAT 289
||| |||||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 685 GAG-AGTTCAAGCCTTTCTTACATCATCGACCTCGCTAAGGTTCTGCCATCAGATGTTAT 743
Query 290 GTTCGGGTTTATAGCTGCTGCTGGAACAAACACAGAGGAACATAGACTTTTATCATGGGA 349
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 GTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGGGA 803
Query 350 GCTCAGTTCA-GCTTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTAGTTGGCA 408
|||||||||| | |||||| | ||| ||||||||||||| ||||||| | ||| ||||||
Sbjct 804 GCTCAGTTCAAG-TTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGCA 862
Query 409 TTTCGGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTTG 466
|||||| ||||||||||||||| |||| |||| ||||| | ||| | ||||||||||||
Sbjct 863 TTTCGGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTTG 920
Query 467 GTCACGGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGATATCGATAAACGA 526
|||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |
Sbjct 921 GTCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACAA 980
Query 527 AGATCTTGAAAGGGAAGCAGCGA--AAGAAAG 556
||| |||||||||||||||| || |||||||
Sbjct 981 AGACCTTGAAAGGGAAGCAG-GACCAAGAAAG 1011
> AT5G24910.1 | Symbols: CYP714A1 | cytochrome P450, family 714,
subfamily A, polypeptide 1 | chr5:8567581-8570358 REVERSE
LENGTH=1790
Length=1790
Score = 165 bits (89), Expect = 9e-40
Identities = 155/182 (85%), Gaps = 23/182 (13%)
Strand=Plus/Plus
Query 66 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATG 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATG 873
Query 125 G-----C----------TTC---AC----AAGCATGGGAACGGGAAGATTGATGAGCTAG 162
| | ||| || |||||||||||||||||||||||||||||||
Sbjct 874 GCTTCACTGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAG 933
Query 163 AGAGGCATATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGG 222
|||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 934 AGAGACACATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGG 993
Query 223 GA 224
||
Sbjct 994 GA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5