BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947466

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37900.1 | Symbols:  | TRAF-like superfamily protein | chr5:...   259    1e-68
  AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like...   200    9e-51


> AT5G37900.1 | Symbols:  | TRAF-like superfamily protein | chr5:15093903-15094802 
REVERSE LENGTH=726
Length=726

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 215/252 (85%), Gaps = 2/252 (1%)
 Strand=Plus/Plus

Query  139  TGTTTGCAGTGCAGTGTTTTAGGGAGCCATGTGGTGTGTATTTTACCGTAAGCTGCATTG  198
            |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||
Sbjct  452  TGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGTGTATGTAACCGTAAGCTGCATTG  511

Query  199  CACCATCTGCTCCAGGA-TTAAGACAGTTCTCATACCATCTCTCCTACACTGTGGATGGG  257
            ||||||||||||||| | ||  ||||||||||||| ||  ||||||||||||||||||  
Sbjct  512  CACCATCTGCTCCAGAAGTTG-GACAGTTCTCATATCAAATCTCCTACACTGTGGATGAA  570

Query  258  CACACTATGATTTACAAATCACCAGAGGTTAAGAGAGTTCTTAAAGTGAGCTCCCAAAGA  317
            ||||||||| |||||| ||||||| |  | ||||| |||| ||||||||| |   ||| |
Sbjct  571  CACACTATGGTTTACAGATCACCACAAATGAAGAGGGTTCGTAAAGTGAGTTTTGAAACA  630

Query  318  CCTGAAGAGAGTTTCATGTTGATCCCTAACAGTTTATTGCATGGTGAAATGTTGGAGATC  377
            ||| |||||| |||||||||||| ||| ||| |||||||| | ||||| ||||||| || 
Sbjct  631  CCTCAAGAGAATTTCATGTTGATACCTCACAATTTATTGCGTAGTGAATTGTTGGATATT  690

Query  378  AAGCTTTTTATC  389
            ||||||| ||||
Sbjct  691  AAGCTTTCTATC  702


> AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like 
domains | chr5:15073764-15074851 REVERSE LENGTH=846
Length=846

 Score =  200 bits (108),  Expect = 9e-51
 Identities = 222/275 (81%), Gaps = 15/275 (5%)
 Strand=Plus/Plus

Query  139  TGTTTGCAGTGCAGTGTTTTAG-GGAGCCATGTGGTGTGTATTTTA-CCGTAAGCTGCAT  196
            |||||| ||||||||||||| | |||||| |||||||| || | || | |||||||||||
Sbjct  572  TGTTTGTAGTGCAGTGTTTT-GAGGAGCCGTGTGGTGTTTA-TGTATCTGTAAGCTGCAT  629

Query  197  TGCACCATCTGCTCCAGGATTAAGACAGTTCTCATACCATCTCTCCTACACT--GT-GGA  253
            ||||||||||||||||| | || || ||||||||||   |||||  ||||||   | |||
Sbjct  630  TGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTTGGGA  689

Query  254  TGG-GCACACTATGATTTACAAATCACCAGAGGT-TAAGAGAGTTCTTAAAGTGAGCTCC  311
             || |  |||||||| |||| |||||||| ||||  || || ||||||||||||||||||
Sbjct  690  AGGAG-TCACTATGACTTACCAATCACCAAAGGTGAAAAAG-GTTCTTAAAGTGAGCTCC  747

Query  312  CAAAGACCTGAAGAGAGTTTCATGTTGATCCCTAACAGTTTATTGCATGGTGAAATGTT-  370
            ||||||||| |||| |||||||||||||||||| ||||||| ||   ||||  | |||| 
Sbjct  748  CAAAGACCTAAAGATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTCCATTGTTA  807

Query  371  GGAGATCAAGCTTTTTATCAA-GAAGCTAAAGCAA  404
            || ||| | |||||  ||||| || | | ||||||
Sbjct  808  GG-GATGATGCTTTGCATCAATGA-GTTGAAGCAA  840



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5