BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947468

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like...   326    2e-88
  AT5G37900.1 | Symbols:  | TRAF-like superfamily protein | chr5:...   180    2e-44
  AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like...   165    5e-40


> AT5G37870.1 | Symbols:  | Protein with RING/U-box and TRAF-like 
domains | chr5:15073764-15074851 REVERSE LENGTH=846
Length=846

 Score =  326 bits (176),  Expect = 2e-88
 Identities = 233/261 (89%), Gaps = 2/261 (1%)
 Strand=Plus/Plus

Query  442  TGCAATGTTTCGAGGAGCCATTTGGTGTTTATGTAACTGTAAGCTGCATTGCACCATCTG  501
            |||| ||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct  581  TGCAGTGTTTTGAGGAGCCGTGTGGTGTTTATGTATCTGTAAGCTGCATTGCACCATCTG  640

Query  502  CTCCAGAAGTAGGAGAGTTCTCATATCATCTCTCCTACACTACT-GAGGATGAACACACT  560
            ||||||||||||||||||||||||||  |||||  ||||||||| | ||| | |  ||||
Sbjct  641  CTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTTG-GGAAGGAGTCACT  699

Query  561  ATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCTCCCAAAGACCTAAA  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  700  ATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCTCCCAAAGACCTAAA  759

Query  621  GAGAGTTCCATATTGATCCCTCACAATTTGATACGTTATCAATTGTTAATTATGAAGCTT  680
            || |||| ||| ||||||||||||| |||| || ||  || |||||||   |||| ||||
Sbjct  760  GATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTCCATTGTTAGGGATGATGCTT  819

Query  681  TGCATCAATGAGTTGAAGCAA  701
            |||||||||||||||||||||
Sbjct  820  TGCATCAATGAGTTGAAGCAA  840


> AT5G37900.1 | Symbols:  | TRAF-like superfamily protein | chr5:15093903-15094802 
REVERSE LENGTH=726
Length=726

 Score =  180 bits (97),  Expect = 2e-44
 Identities = 199/246 (81%), Gaps = 15/246 (6%)
 Strand=Plus/Plus

Query  442  TGCAATG-TTTCGAGGAGCCATTTGGTGTTTATGTAACTGTAAGCTGCATTGCACCATCT  500
            |||| || ||| | |||| | | |||||| |||||||| |||||||||||||||||||||
Sbjct  461  TGCAGTGTTTTAG-GGAGTCGTGTGGTGTGTATGTAACCGTAAGCTGCATTGCACCATCT  519

Query  501  GCTCCAGAAGTAGGAGAGTTCTCATATCATCTCTCCTACACTACTGAGGATGAACACACT  560
            ||||||||||| ||| |||||||||||||  |||||||||||  || | |||||||||||
Sbjct  520  GCTCCAGAAGTTGGACAGTTCTCATATCAAATCTCCTACACTG-TG-G-ATGAACACACT  576

Query  561  ATGACTTACCA-ATCACCA-AAGGTGAAAAAGGTTCTTAAAGTGAGCTCCCAAAGACCTA  618
            |||  |||| | ||||||| ||  |||| | ||||| ||||||||| |   ||| |||| 
Sbjct  577  ATGGTTTAC-AGATCACCACAAA-TGAAGAGGGTTCGTAAAGTGAGTTTTGAAACACCTC  634

Query  619  AAGAGAGTTCCATATTGATCCCTCACAATTTGATA-CGTTA-TCAATTGTTA-ATTATGA  675
            |||||| || ||| ||||| ||||||||||| ||  ||| | | |||||||  || || |
Sbjct  635  AAGAGAATTTCATGTTGATACCTCACAATTT-ATTGCGT-AGTGAATTGTTGGAT-ATTA  691

Query  676  AGCTTT  681
            ||||||
Sbjct  692  AGCTTT  697


> AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like 
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831

 Score =  165 bits (89),  Expect = 5e-40
 Identities = 172/211 (82%), Gaps = 9/211 (4%)
 Strand=Plus/Plus

Query  442  TGCAATG-TTTCGAGGAGCCATTTGGTGTTTATGTAACTGTAAGCTGCATTGCACCATCT  500
            |||| || ||| | ||| || | |||||| ||||| |||||||||| |||||||||||||
Sbjct  566  TGCAGTGTTTTAG-GGAACCGTGTGGTGTGTATGTGACTGTAAGCTTCATTGCACCATCT  624

Query  501  GCTCCAGAAGTAGGAGAGTTCTCATATCATCTCTCCTACACTACTGAGGATGAACACACT  560
            ||||||||||||||||||||||||||||| ||||||||||  | || ||||| |||||||
Sbjct  625  GCTCCAGAAGTAGGAGAGTTCTCATATCAACTCTCCTACA--A-TGTGGATGGACACACT  681

Query  561  ATGACTTACCAATCACCAAAGGTGAAAAAGGTTCT-TAAAGTGAGC-TCCCAAAGACCTA  618
             |||||||  |||| ||  ||||||| | |||| | |||||||||  |   |||  ||| 
Sbjct  682  GTGACTTATGAATCTCCGGAGGTGAAGAGGGTT-TGTAAAGTGAGTATTG-AAACCCCTC  739

Query  619  AAGAGAGTTCCATATTGATCCCTCACAATTT  649
            |||||| || ||| ||||| ||||||| |||
Sbjct  740  AAGAGAATTTCATGTTGATACCTCACAGTTT  770



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35264371194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5