BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947469
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like... 889 0.0
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like... 545 2e-154
AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like... 453 1e-126
AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:... 348 5e-95
> AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090286-15091894 REVERSE LENGTH=1159
Length=1159
Score = 889 bits (481), Expect = 0.0
Identities = 688/786 (88%), Gaps = 22/786 (3%)
Strand=Plus/Plus
Query 4 CTAAGAAACGCTCGACGATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTAAGAAACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 238
Query 64 AAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 298
Query 124 GTCCCACCCTGAGTAATAAATGCCCTACATGTGCT-CTGCCTATTGGCCATAATCGTTGC 182
|||||| || | ||| ||||||||| | ||| || | |||| ||||||| ||||| |||
Sbjct 299 GTCCCAAACTAAATAACAAATGCCCTGCGTGTACTTC-GCCTGTTGGCCACAATCGCTGC 357
Query 183 AGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCATGTCCGAACGCCAAGTTTGGA 242
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 358 AGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCCAAGTTAGGT 417
Query 243 TGCACAAAGAAGGTATCTTATGGGAAAGAATCAACTCATGAAAAAGAATGCATCTTCTCT 302
|||| |||||| ||||||||||||||||| | |||||||||||| |||||||| ||||||
Sbjct 418 TGCAAAAAGAATGTATCTTATGGGAAAGAGTTAACTCATGAAAAGGAATGCATGTTCTCT 477
Query 303 CAATGCTCATGCCCTGTAGAGGACTGCAATTACACTAGCTCATACAAGGATCTCTACACT 362
|| ||| | ||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 478 CATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGATCTGTACACT 537
Query 363 CACTATCGTATTACCCATATG-AAAGTATACCAGCTTCATAAGTTCATTTGTGACATTCC 421
||||||||||||||||||||| ||| || ||||| || ||| ||||||||||||||||||
Sbjct 538 CACTATCGTATTACCCATATGGAAA-TAAACCAGATTAATACGTTCATTTGTGACATTCC 596
Query 422 CTCTAT-TGTCAAGATGAACATCAGCAGCGATAAGAAGATATTAATTAGAATGGAATACA 480
|| || |||| |||||||||||||| | || | |||||| ||||||| |||| ||
Sbjct 597 CT-TAAGTGTCCGGATGAACATCAGCA---A-AA-A-GATATTGATTAGAACGGAACACT 649
Query 481 TGAAGAGAATC-TT-GTTTGCAGTGCAGTGTTTTAGGGACCCATGTGGTGTGTATGTAAC 538
||| || | || || |||||||||||||||||| ||||| || | |||||||||||||||
Sbjct 650 TGACGA-A-TCATTTGTTTGCAGTGCAGTGTTTCAGGGAGCCGTATGGTGTGTATGTAAC 707
Query 539 CGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCATAT-CGTCTCTCCT 597
|||||||||||||| |||||| |||||||| || | |||| ||||||| | |||||| |
Sbjct 708 TGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATATGC-TCTCTCTT 766
Query 598 ATACCGTGGATGGGCACACTATGATTTACAAATCACCGGATGTGAAGAGAGTTCTGAAAT 657
| || || ||||| |||||| |||||||| ||||||| || |||||||| ||||| || |
Sbjct 767 ACACTGTCGATGGACACACTGTGATTTACCAATCACCAGAGGTGAAGAGGGTTCTTAAGT 826
Query 658 TGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGAT-CCCTAACAGTTTATTGCGTGGT 716
||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 827 TGAGTTTTCAAACCCCGCAAGAGAATTTCATGTTGATTCCC-AACAGTTTATTGCGTGGT 885
Query 717 GAAATGTTG-AAGATGAGAATTTGCGTCAAGAAGTTGAACCAATAGTAAGACGGTTGTGG 775
|| ||||| || ||||| ||| ||||||||||||||||| || ||||||| ||||| ||
Sbjct 886 GATGTGTTGGAA-ATGAGGATTAGCGTCAAGAAGTTGAACAAAGAGTAAGAAGGTTGGGG 944
Query 776 TATTCC 781
| ||||
Sbjct 945 TCTTCC 950
> AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831
Score = 545 bits (295), Expect = 2e-154
Identities = 604/748 (81%), Gaps = 42/748 (6%)
Strand=Plus/Plus
Query 7 AGA-AACGCTCGACGAT-GCTAATG---GATCTGGAGATTCTCGATTGTCCCATTTGCTA 61
||| |||||||| |||| | || || ||||| || || ||||||||||| |||||||
Sbjct 67 AGACAACGCTCGGCGATAG-TACTGCTAGATCTTGATATCCTCGATTGTCCTATTTGCTG 125
Query 62 CGAAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTG 121
||||| || || | |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 126 TGAAGCATTGACGAGTCCTATCTTCCAGTGTGATAATGGGCATTTGGCTTGCGGTTCTTG 185
Query 122 CTGTCCCACCCTGAGTAATAAATGCCCTACATGTGCTCTGCCTATTGGCCATAATCGTTG 181
|||||||| ||||||||||| |||||| ||||| || ||||| |||| || | ||| |
Sbjct 186 CTGTCCCAAACTGAGTAATAAGTGCCCTGCATGTACTTTGCCTGTTGGTCACAGTCGCAG 245
Query 182 CAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCATGTCCGAACGCCAAGTTTGG 241
||||||||||||||||||||||||||| || ||||||||||| || |||| || ||||||
Sbjct 246 CAGAGCAATGGAGAGTGTTCTTGAATCTATTTTGATCCCATGCCCAAACGTCAGGTTTGG 305
Query 242 ATGCACAAAGAAGGTATC--TTATGGGAAAGAATCAACTCATGAAAAAGAATGCATCTTC 299
|| || ||| | || || |||||||||||| ||| |||||||||||||||||||||||
Sbjct 306 TTGTACCAAG-A-GTTTCTTTTATGGGAAAGAGTCAGCTCATGAAAAAGAATGCATCTTC 363
Query 300 TCTCAATGCTCATGCCCTGT-AGAGGACTGCAATTACACTAGCTCATACAAGGATCTCTA 358
|||||||||||||||||| | | || |||| |||||||| |||||||||||||||||||
Sbjct 364 TCTCAATGCTCATGCCCT-TCATCGGTCTGCGATTACACTGGCTCATACAAGGATCTCTA 422
Query 359 CACTCACTATCGTATT-ACCCA-T--ATGAA-AGTATACCAGCTTCAT-AAGTTCATT-- 410
| |||||||| | | || || | | ||| | | | | | | || ||| | ||
Sbjct 423 CGCTCACTATAA-ACTGACTCACTCCACGAATATTTT-CTGGAAT-ATTAAGCGCTTTAG 479
Query 411 -TGTGACA-TTCCCTCTATTGTCAAG-ATGAACATCAGCAGCGATAAGAAGATATTAATT 467
|||| || || | | || | | ||| | ||| ||||||||||| || |||||
Sbjct 480 ATGTGCCAATTTCTT-TAC-GACCTCCATG--C-TCATCAGCGATAAGA---TACTAATT 531
Query 468 AGAATGGAATACATGAAGA-GAATCT-T-GTTTGCAGTGCAGTGTTTTAGGGACCCATGT 524
| || || ||||||| || ||| || | | |||||||||||||||||||||| || |||
Sbjct 532 AAAAGGG--TACATGA-GAAGAAACTATTGCTTGCAGTGCAGTGTTTTAGGGAACCGTGT 588
Query 525 GGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCA 584
||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 589 GGTGTGTATGTGACTGTAAGCTTCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCA 648
Query 585 TATCGTCTCTCCTATACCGTGGATGGGCACACTATGATTTACAAATCACCGGATGTGAAG 644
|||| |||||||| | |||||||| |||||| ||| ||| |||| ||||| ||||||
Sbjct 649 TATCAACTCTCCTACAATGTGGATGGACACACTGTGACTTATGAATCTCCGGAGGTGAAG 708
Query 645 AGAGTTCTG-AAATTGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGATCCCTAACAG 703
|| ||| || ||| ||| | || |||||||||||||||||||||||||||| ||| ||||
Sbjct 709 AGGGTT-TGTAAAGTGAGTATTGAAACCCCTCAAGAGAATTTCATGTTGATACCTCACAG 767
Query 704 TTTATTGCGTGGTGAAATGTTGAAGATG 731
||||||||||||||| ||||| |||||
Sbjct 768 TTTATTGCGTGGTGACTTGTTGGAGATG 795
> AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15073764-15074851 REVERSE LENGTH=846
Length=846
Score = 453 bits (245), Expect = 1e-126
Identities = 613/782 (78%), Gaps = 59/782 (8%)
Strand=Plus/Plus
Query 5 TAAGAAACGCTCGA-CGATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 63
||||| ||||| | ||||||| | |||||| || |||||||| |||||||||||||||
Sbjct 90 TAAGACCCGCTC-AGCGATGCTGACGGATCTTGATATTCTCGACTGTCCCATTTGCTACC 148
Query 64 AAGCTTTCACA-ATTCCTATCTTCCAGTGT-GATAATGGACATTTGGCTTGTTCTTCTTG 121
|||| || | | |||||| ||||||||||| || ||||| |||||||| |||||||||||
Sbjct 149 AAGCATTGA-AGATTCCTGTCTTCCAGTGTGGA-AATGGGCATTTGGCCTGTTCTTCTTG 206
Query 122 CTGTCCCACCCTGAGTAATAAATGCCCTACATGTGCTCTGCCTATTGGCCATAATCGTTG 181
|||||||| |||| |||||||| ||| |||||||| ||||| |||| || | ||| ||
Sbjct 207 CTGTCCCAAATTGAGGAATAAATGTCCTGCATGTGCTTTGCCTGTTGGACACATTCGCTG 266
Query 182 CAGAGCAATGGAGAGTGTTCTTGAATCGA-TCTTGATCCCATGTCCGA-ACGCCAAG-TT 238
|||||||||||||| ||||||||||| | ||||| ||||||| |||| ||| | || ||
Sbjct 267 TAGAGCAATGGAGAGAGTTCTTGAATC-AGTCTTGGTCCCATG-CCGATACG-C-AGATT 322
Query 239 T-GGATGCACAAAGA-AGGTATCTTATGGGAAAGAATCAACTCATGAAAAAGA-ATGCAT 295
| || ||||| |||| | | | |||||||| ||||||||| |||| | |||| |||||
Sbjct 323 TAGGTTGCACCAAGACA-ATCTATTATGGGAGAGAATCAACCCATG-AGAAGATATGCAA 380
Query 296 CTTCTCTCAATGCTCATGCCCTGTA-GAGGACTGCAATTACACTAGCTCATACAAGGATC 354
|||||||| |||||| ||||||||| ||| |||||||| ||| |||||||||||||||
Sbjct 381 CTTCTCTCCATGCTCCTGCCCTGTACAAGG-TTGCAATTATACTGGCTCATACAAGGATC 439
Query 355 TCTAC-ACTCACTATCG-TATTACCCATATG-A-AAGTATAC-CAGCTTCATAAG-TTCA 408
| ||| | |||||| | | |||| || | | | | ||| | | |||| || || ||||
Sbjct 440 TATACGA-GCACTAT-GATCTTACTCACA-GTACAGGTA-GCACGGCTT-AT-AGTTTCA 493
Query 409 TTTGTGACATTCCCTCTATTGTCAAGATGAACATCAGCAGCGATAAGAAGATATTAATTA 468
|| | | || ||| ||| | | ||||| ||| ||||||| |||||| |||||
Sbjct 494 -ATG-G-CGTTTCCTATATAGCCGCGATGATGTTCATCAGCGAT---AAGATACTAATT- 546
Query 469 G-AATGGAATA-CATGAAGAGAA-TCTTGTTTGCAGTGCAGTGTTTTAG-GGACCCATGT 524
| || || ||| | ||||| || | ||||||| ||||||||||||| | ||| || |||
Sbjct 547 GAAAGGGTATATGA-GAAGA-AACTATTGTTTGTAGTGCAGTGTTTT-GAGGAGCCGTGT 603
Query 525 GGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCA 584
||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 GGTGTTTATGTATCTGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCA 663
Query 585 TATCGTCTCTCCTATAC--CGTGG-ATGG-GCACACTATGATTTACAAATCACCGGATGT 640
||| |||||| || || | ||| | || | |||||||| |||| ||||||| | ||
Sbjct 664 TATGGTCTCTTGTACACTACTTGGGAAGGAGT-CACTATGACTTACCAATCACCAAAGGT 722
Query 641 GAAGAGAG-TTCTGAAATTGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGATCCCTA 699
||| | || |||| ||| ||| | |||| ||| |||| | ||||||||||||||||
Sbjct 723 GAAAA-AGGTTCTTAAAGTGAGCTCCCAAAGACCTAAAGATAGTTTCATGTTGATCCCTC 781
Query 700 ACAGTTTATTGCGTGGTGAAATGTTGAAG-ATGA-GAATTTGCGTCAA-GAAGTTGAACC 756
||||||| || ||||| | |||| | | |||| | ||||| |||| || |||||| |
Sbjct 782 ACAGTTTGTTATGTGGTCCATTGTT-AGGGATGATGC-TTTGCATCAATGA-GTTGAAGC 838
Query 757 AA 758
||
Sbjct 839 AA 840
> AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:15093903-15094802
REVERSE LENGTH=726
Length=726
Score = 348 bits (188), Expect = 5e-95
Identities = 439/556 (79%), Gaps = 34/556 (6%)
Strand=Plus/Plus
Query 187 CAATGGAGAGTGTTCTTGAATCGATCTTGATCCCATGTCCGAACGCCAAGTTTGGATGCA 246
||||||||| | ||||||||||||| ||| || |||| || |||| || |||||| ||||
Sbjct 146 CAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGACATGTTTGGTTGCA 205
Query 247 CAAAGAAGGTATC-T-TATGGGAAAGAATCAACTCATGAAAAAGAATGCATCTTCTCTCA 304
| || | || || | ||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 206 CCGAG-A-GTTTCTTATATGGGAAAAAATCAACTCATGAAGAAGAATGCATTTTCTCTCT 263
Query 305 ATGCTCATGCCCTGT-AGAGGACTGCAATTACACTAGCTC-ATACAAGGATCTCTA-CAC 361
||||||||||||| | | |||||| | ||| | || | |||| |||||||||| |
Sbjct 264 ATGCTCATGCCCT-TCATTGGACTGTGAGTACTCCGGC-CGATACGAGGATCTCTATGA- 320
Query 362 TCACTATCGTA-TTAC-C-CATAT-GAAAGT-ATACCAGCTTCA-TAAGTTCATTT-G-T 413
||||||| | | || | ||| | | || | ||| | | || ||| | | ||| | |
Sbjct 321 TCACTAT-AAACTGACTCACATCTCG-AACTCATA-CTGGACCACTAACTGC-TTTAGAT 376
Query 414 -GA-CATTCCCTCTATTGTCAAGATGAACATCAGCAGCGATAAGAAGATATTAATTAGAA 471
| |||||| | || | | |||| | | | ||||||| |||||| ||||| ||
Sbjct 377 CTAGCATTCCATATAAGGCCCCGATG--C-TTATCAGCGAT---AAGATACAAATTACAA 430
Query 472 TGGAATA-CATGAAGAGAATCTTGTTTGCAGTGCAGTGTTTTAGGGACCCATGTGGTGTG 530
|| ||| | ||||| ||| |||||||||||||||||||||||||| | |||||||||
Sbjct 431 GGGTATATGA-GAAGAAAATATTGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGTG 489
Query 531 TATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCATATCGT 590
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 490 TATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTTGGACAGTTCTCATATCAA 549
Query 591 CTCTCCTATACCGTGGATGGGCACACTATGATTTACAAATCACCGGATGTGAAGAGAGTT 650
||||||| || ||||||| ||||||||| |||||| |||||| | ||||||| |||
Sbjct 550 ATCTCCTACACTGTGGATGAACACACTATGGTTTACAGATCACCACAAATGAAGAGGGTT 609
Query 651 C-TGAAATTGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGATCCCTAACAGTTTATT 709
| | ||| ||| |||| |||| ||||||||||||||||||||||| ||| ||| ||||||
Sbjct 610 CGT-AAAGTGAGTTTTGAAACACCTCAAGAGAATTTCATGTTGATACCTCACAATTTATT 668
Query 710 GCGTGGTGAAATGTTG 725
|||| ||||| |||||
Sbjct 669 GCGTAGTGAATTGTTG 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5