BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947470
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1013 0.0
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like... 568 4e-161
AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like... 484 5e-136
AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:... 311 8e-84
> AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090286-15091894 REVERSE LENGTH=1159
Length=1159
Score = 1013 bits (548), Expect = 0.0
Identities = 790/905 (87%), Gaps = 24/905 (3%)
Strand=Plus/Plus
Query 1 TTAGGGTTTAGCCATCTCTCCGATATGGTTGGAGCCGCGATTTCGGAATCTTCCGGCGAA 60
||||||||||| ||||||||||| |||||||| |||||||||| ||||||| ||||||||
Sbjct 49 TTAGGGTTTAGTCATCTCTCCGACATGGTTGGTGCCGCGATTTTGGAATCTCCCGGCGAA 108
Query 61 GGAATTGGATCTAACAGCATTCTCTCGCAAAAGAGACAACTTTCTTCCAGTGATGGAGCC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 109 GGAATTGGATCTAACAGCATTCTCTCGCAAAAGAGACAACTTTCTTCTAGTGATGCAGCT 168
Query 121 AAGAGAGACGCTAAAAAACGCTCGATTATGCTAATGGAACTGGAGATTCTCGATTGTCCT 180
|||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 169 AAGAGAGACGCTAAGAAACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCC 228
Query 181 ATTTGCTACGAAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGACATCTGGCTTGT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 229 ATTTGCTACGAAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGT 288
Query 241 TCTTCTTGCTGTCCCAAACTGAATAATAAATGCCCTGCTTGTGCTTCGCCTGTTGGCCAC 300
|||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||
Sbjct 289 TCTTCTTGCTGTCCCAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCAC 348
Query 301 AATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGGTCCCATGTCCAAACGCT 360
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 349 AATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCC 408
Query 361 AAGTTAGGTTGCACAAAGAA-GTTCTCTTATGGGAAAGAATCAACTCATGAAAAGGAATG 419
||||||||||||| |||||| || |||||||||||||| | ||||||||||||||||||
Sbjct 409 AAGTTAGGTTGCAAAAAGAATGTA-TCTTATGGGAAAGAGTTAACTCATGAAAAGGAATG 467
Query 420 CATGTTCTCTCAATGCTCCTGCCCTGCATTGGATTGCAATTATACTTGCTCATACAAGGA 479
|||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 468 CATGTTCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGA 527
Query 480 TCTCTAC-CGTCACTATCATACTACCCACT-TGGAGGTATATCATCTTAATAAGTTC-TG 536
||| ||| | |||||||| || |||||| | |||| || | || |||||| |||| |
Sbjct 528 TCTGTACAC-TCACTATCGTATTACCCA-TATGGAAATAAACCAGATTAATACGTTCAT- 584
Query 537 TTGTGGCAGTTTCTTTA-GTATCCGGATAAACATCAGCGAGAAGATGTTAATTAGA-CTG 594
||||| || || | ||| || ||||||| ||||||||| | ||||| || |||||| | |
Sbjct 585 TTGTGACA-TTCCCTTAAGTGTCCGGATGAACATCAGCAAAAAGATATTGATTAGAAC-G 642
Query 595 GAGTACACAA-AGGC-TCTTTTGTTTGCGGTGCAGTGTTTCCAGGAA-CCGTACGGTGTG 651
|| |||| | | || ||||||||| |||||||||||| ||| | ||||| ||||||
Sbjct 643 GA--ACACTTGACGAATCATTTGTTTGCAGTGCAGTGTTTC-AGGGAGCCGTATGGTGTG 699
Query 652 TATGTAACTGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGAAATTTCTCATATGAT 711
||||||||||||||||||||||| |||||| |||||||| || | | | |||||||| |
Sbjct 700 TATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATATGCT 759
Query 712 CTCTCCTACACTGTGGATGGACAAACTATGACTTACAAATCGCCAAAGATGAAGATGATT 771
||||| |||||||| |||||||| ||| ||| |||| |||| ||| || |||||| | ||
Sbjct 760 CTCTCTTACACTGTCGATGGACACACTGTGATTTACCAATCACCAGAGGTGAAGAGGGTT 819
Query 772 CTTGAAGT-GAGTTTTCAAACTCCTCAAGAGAATTTCATGTTGAT-CCCTAACAATTTAT 829
||| |||| |||||||||||| || |||||||||||||||||||| ||| |||| |||||
Sbjct 820 CTT-AAGTTGAGTTTTCAAACCCCGCAAGAGAATTTCATGTTGATTCCC-AACAGTTTAT 877
Query 830 TGCGTGGTGACATGTTGGACATGAAGCTTTTAATCAAGGAGTTGAAGCAA-GAGTAAGAA 888
|||||||||| ||||||| |||| | || ||||| ||||||| ||| |||||||||
Sbjct 878 TGCGTGGTGATGTGTTGGAAATGAGGATTAGCGTCAAGAAGTTGAA-CAAAGAGTAAGAA 936
Query 889 GGTTG 893
|||||
Sbjct 937 GGTTG 941
> AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831
Score = 568 bits (307), Expect = 4e-161
Identities = 586/717 (82%), Gaps = 34/717 (5%)
Strand=Plus/Plus
Query 169 CTCGATTGTCCTATTTGCTACGAAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGA 228
||||||||||||||||||| ||||| || || | ||||||||||||||||||||||||
Sbjct 106 CTCGATTGTCCTATTTGCTGTGAAGCATTGACGAGTCCTATCTTCCAGTGTGATAATGGG 165
Query 229 CATCTGGCTTGTTCTTCTTGCTGTCCCAAACTGAATAATAAATGCCCTGCTTGTGCTTCG 288
||| ||||||| |||||||||||||||||||| |||||| |||||||| ||| ||| |
Sbjct 166 CATTTGGCTTGCGGTTCTTGCTGTCCCAAACTGAGTAATAAGTGCCCTGCATGTACTTTG 225
Query 289 CCTGTTGGCCACAATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGGTCCCA 348
|||||||| |||| |||| |||||||||||||||||||||||||||| || ||| |||||
Sbjct 226 CCTGTTGGTCACAGTCGCAGCAGAGCAATGGAGAGTGTTCTTGAATCTATTTTGATCCCA 285
Query 349 TGTCCAAACGCTAAG-TTAGGTTGCACAAAGAAGTT-CTCTTATGGGAAAGAATCAACTC 406
|| ||||||| | || || ||||| || |||| ||| || |||||||||||| ||| |||
Sbjct 286 TGCCCAAACG-TCAGGTTTGGTTGTACCAAGA-GTTTCTTTTATGGGAAAGAGTCAGCTC 343
Query 407 ATGAAAAGGAATGCATGTTCTCTCAATGCTCCTGCCCTGCATTGGAT-TGCAATTATACT 465
||||||| |||||||| |||||||||||||| |||||| ||| || | ||| |||| |||
Sbjct 344 ATGAAAAAGAATGCATCTTCTCTCAATGCTCATGCCCTTCATCGG-TCTGCGATTACACT 402
Query 466 TGCTCATACAAGGATCTCTAC-CGTCACTATCATACT-ACCCACTTGGAGGTATATCATC 523
|||||||||||||||||||| | ||||||| | ||| || |||| | | |||| ||
Sbjct 403 GGCTCATACAAGGATCTCTACGC-TCACTATAA-ACTGACTCACTCC-ACGAATATTTTC 459
Query 524 TT-AATA--A-GTTCTGTT-G-TG-GC-AGTTTCTTTA-GTA--TCCGGATAAACATCAG 572
| |||| | | || || | || || | |||||||| | | ||| || ||||||
Sbjct 460 TGGAATATTAAGCGCT-TTAGATGTGCCAATTTCTTTACG-ACCTCC--ATGCTCATCAG 515
Query 573 CGAGAAGATGTTAATTAGACTGGAGTACAC-A-AAGGCTCTTTTGTTTGCGGTGCAGTGT 630
||| ||||| |||||| | || ||||| | ||| || ||| |||| |||||||||
Sbjct 516 CGATAAGATACTAATTAAAA-GG-GTACATGAGAAGAAACTATTGCTTGCAGTGCAGTGT 573
Query 631 TTCCAGG-AACCGTACGGTGTGTATGTAACTGTAAGCTGCATTGCACCATCTGCTCCAGA 689
|| ||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 574 TTT-AGGGAACCGTGTGGTGTGTATGTGACTGTAAGCTTCATTGCACCATCTGCTCCAGA 632
Query 690 AGTAGGAAATTTCTCATATGATCTCTCCTACACTGTGGATGGACAAACTATGACTTACAA 749
||||||| | ||||||||| | |||||||||| |||||||||||| ||| ||||||| |
Sbjct 633 AGTAGGAGAGTTCTCATATCAACTCTCCTACAATGTGGATGGACACACTGTGACTTATGA 692
Query 750 ATCGCCAAAGATGAAGATGATTCT-TGAAGTGAGTTTTCAAACTCCTCAAGAGAATTTCA 808
||| || || |||||| | || | | |||||||| || |||| ||||||||||||||||
Sbjct 693 ATCTCCGGAGGTGAAGAGGGTT-TGTAAAGTGAGTATTGAAACCCCTCAAGAGAATTTCA 751
Query 809 TGTTGATCCCTAACAATTTATTGCGTGGTGACATGTTGGACATGAAGCTTTTAATCA 865
||||||| ||| ||| |||||||||||||||| ||||||| ||| || |||| ||||
Sbjct 752 TGTTGATACCTCACAGTTTATTGCGTGGTGACTTGTTGGAGATGCAGGTTTTTATCA 808
> AT5G37870.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15073764-15074851 REVERSE LENGTH=846
Length=846
Score = 484 bits (262), Expect = 5e-136
Identities = 600/757 (79%), Gaps = 47/757 (6%)
Strand=Plus/Plus
Query 148 ATGCTAATGGAACTGGAGATTCTCGATTGTCCTATTTGCTACGAAGCTTTCACA-ATTCC 206
||||| | ||| || || |||||||| ||||| ||||||||| |||| || | | |||||
Sbjct 106 ATGCTGACGGATCTTGATATTCTCGACTGTCCCATTTGCTACCAAGCATTGA-AGATTCC 164
Query 207 TATCTTCCAGTGT-GATAATGGACATCTGGCTTGTTCTTCTTGCTGTCCCAAACTGAATA 265
| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||| ||| |
Sbjct 165 TGTCTTCCAGTGTGGA-AATGGGCATTTGGCCTGTTCTTCTTGCTGTCCCAAATTGAGGA 223
Query 266 ATAAATGCCCTGCTTGTGCTTCGCCTGTTGGCCACAATCGCTGCAGAGCAATGGAGAGTG 325
||||||| ||||| ||||||| ||||||||| |||| |||||| |||||||||||||| |
Sbjct 224 ATAAATGTCCTGCATGTGCTTTGCCTGTTGGACACATTCGCTGTAGAGCAATGGAGAGAG 283
Query 326 TTCTTGAATCGA-TCTTGGTCCCATGTCC-AAACGCTA-AGTTAGGTTGCACAAAGA-AG 381
|||||||||| | ||||||||||||| || | |||| | | ||||||||||| |||| |
Sbjct 284 TTCTTGAATC-AGTCTTGGTCCCATG-CCGATACGC-AGATTTAGGTTGCACCAAGACA- 339
Query 382 TTCTCTTATGGGAAAGAATCAACTCATGAAAAGGA-ATGCATGTTCTCTCAATGCTCCTG 440
||| |||||||| ||||||||| ||||| || || ||||| ||||||| |||||||||
Sbjct 340 ATCTATTATGGGAGAGAATCAACCCATGAGAA-GATATGCAACTTCTCTCCATGCTCCTG 398
Query 441 CCCTG--CATTGGATTGCAATTATACTTGCTCATACAAGGATCTCTACCG-TCACTATCA 497
||||| || || ||||||||||||| |||||||||||||||| || || |||||| |
Sbjct 399 CCCTGTACA-AGG-TTGCAATTATACTGGCTCATACAAGGATCTATA-CGAGCACTATGA 455
Query 498 TAC-TACCCAC-TTGGAGGTA-TATCATCTTAATAAGTTCTGTTGTGGCAGTTT-CTTTA 553
| | ||| ||| | ||||| | | ||| || |||| | |||| |||| || ||
Sbjct 456 T-CTTACTCACAGTACAGGTAGCA-CGGCTT-AT-AGTT-T-CAATGGC-GTTTCCTATA 508
Query 554 GTATCCG-GAT-A--AACATCAGCGAGAAGATGTTAATTAGACTGGAGTACA-CA-AAGG 607
|| ||| ||| | ||||||||| ||||| ||||| || || ||| | | |||
Sbjct 509 -TAGCCGCGATGATGTTCATCAGCGATAAGATACTAATT-GAAAGG-GTATATGAGAAGA 565
Query 608 CTCTTTTGTTTGCGGTGCAGTGTTTCCAGGAACCGTACGGTGTGTATGTAACTGTAAGCT 667
|| ||||||| ||||||||||| |||| |||| ||||| |||||| |||||||||
Sbjct 566 AACTATTGTTTGTAGTGCAGTGTTTTGAGGAGCCGTGTGGTGTTTATGTATCTGTAAGCT 625
Query 668 GCATTGCACCATCTGCTCCAGAAGTAGGAAATTTCTCATATGATCTCTCCTACACTG-T- 725
||||||||||||||||||||||||||||| | |||||||||| ||||| |||||| |
Sbjct 626 GCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTT 685
Query 726 GG-ATGGACAAACTATGACTTACAAATCGCCAAAGATGAAGATGATTCTTGAAGTGAGTT 784
|| | ||| |||||||||||| |||| |||||| |||| | | ||||| ||||||| |
Sbjct 686 GGGAAGGAGTCACTATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCT 745
Query 785 TTCAAACTCCTCAAGAGAATTTCATGTTGATCCCTAACAATTTATTGCGTGGTGACAT-G 843
|||| ||| |||| | |||||||||||||||| ||| ||| || ||||| ||| |
Sbjct 746 CCCAAAGACCTAAAGATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTC-CATTG 804
Query 844 TT-GGACATGAAGCTTTTAATCAAGGAGTTGAAGCAA 879
|| || |||| ||||| ||||| ||||||||||||
Sbjct 805 TTAGGG-ATGATGCTTTGCATCAATGAGTTGAAGCAA 840
> AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:15093903-15094802
REVERSE LENGTH=726
Length=726
Score = 311 bits (168), Expect = 8e-84
Identities = 443/570 (78%), Gaps = 42/570 (7%)
Strand=Plus/Plus
Query 314 CAATGGAGAGTGTTCTTGAATCGATCTTGGTCCCATGTCCAAACG-CTAAGTTAGGTTGC 372
||||||||| | ||||||||||||| |||||| |||| ||||||| | | ||| ||||||
Sbjct 146 CAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGAC-ATGTTTGGTTGC 204
Query 373 ACAAAGAAG-TTCTCT-TATGGGAAAGAATCAACTCATGAA-AAGGAATGCATGTTCTCT 429
|| || || |||| | ||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 205 ACCGAG-AGTTTCT-TATATGGGAAAAAATCAACTCATGAAGAA-GAATGCATTTTCTCT 261
Query 430 CAATGCTCCTGCCCTGCATTGGATTGCAATTA-TACTTGCTC-ATACAAGGATCTCTACC 487
| |||||| |||||| ||||||| || | || | | || | |||| ||||||||||
Sbjct 262 CTATGCTCATGCCCTTCATTGGACTGTGAGTACT-CCGGC-CGATACGAGGATCTCTA-T 318
Query 488 G-TCACTATCATACT-ACCCAC-T-TGGAGGT-ATA-T-CATCTTAATAA--G-TTCT-G 536
| ||||||| | ||| || ||| | | || | ||| | | | | ||| | || | |
Sbjct 319 GATCACTAT-AAACTGACTCACATCTCGAACTCATACTGGA-C-CACTAACTGCTT-TAG 374
Query 537 TTGTGGCAGTTTC-T-TTAGTATCCGGATAAACATCAGCGAGAAGATGTTAATTAGACTG 594
| | ||| || | | | || || ||| |||||||| ||||| ||||| | |
Sbjct 375 ATCTAGCA-TTCCATATAAG-GCCCCGATGCTTATCAGCGATAAGATACAAATTACA-AG 431
Query 595 GAGTACA-CA-AAGGCTCTTTTGTTTGCGGTGCAGTGTTTCCA-GGAACCGTACGGTGTG 651
| ||| | | ||| | |||||||| ||||||||||| | ||| ||| ||||||
Sbjct 432 G-GTATATGAGAAGAAAATATTGTTTGCAGTGCAGTGTTT-TAGGGAGTCGTGTGGTGTG 489
Query 652 TATGTAACTGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGAAATTTCTCATATGAT 711
|||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||| |
Sbjct 490 TATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTTGGACAGTTCTCATATCAA 549
Query 712 CTCTCCTACACTGTGGATGGACAAACTATGACTTACAAATCGCCA-AAGATGAAGATGAT 770
|||||||||||||||||| ||| |||||| ||||| ||| ||| || ||||||| | |
Sbjct 550 ATCTCCTACACTGTGGATGAACACACTATGGTTTACAGATCACCACAA-ATGAAGAGGGT 608
Query 771 TCTTGAAGTGAGTTTTCAAACTCCTCAAGAGAATTTCATGTTGATCCCTAACAATTTATT 830
|| | ||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 609 TCGTAAAGTGAGTTTTGAAACACCTCAAGAGAATTTCATGTTGATACCTCACAATTTATT 668
Query 831 GCGTGGTGACAT-GTTGGACATGAAGCTTT 859
|||| |||| || |||||| || |||||||
Sbjct 669 GCGTAGTGA-ATTGTTGGATATTAAGCTTT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5