BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947471
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like... 610 7e-174
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like... 508 3e-143
AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:... 272 4e-72
> AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090286-15091894 REVERSE LENGTH=1159
Length=1159
Score = 610 bits (330), Expect = 7e-174
Identities = 546/649 (84%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 124 TTCTCGATTGTCCTGTTTGCTTCG-AGCCACTCACTATTCCTATCTTCCAGTGTGATAAT 182
||||||||||||| |||||| || || | |||| ||||| ||||||||||||||||||
Sbjct 215 TTCTCGATTGTCCCATTTGCTACGAAG-CTTTCACAATTCCCATCTTCCAGTGTGATAAT 273
Query 183 GGGCATTTGGCTTGCTCTTCTTGCTGTCCCAAACTGAGTAATAAGTGCCCTACATGTACT 242
|| ||||||||||| |||||||||||||||||||| | ||| || |||||| | ||||||
Sbjct 274 GGACATTTGGCTTGTTCTTCTTGCTGTCCCAAACTAAATAACAAATGCCCTGCGTGTACT 333
Query 243 TTGCATGTTGGCAACAAACGTTGCAGAGCAATGGAGAGTGTTCTTGAATCAATCTTTATC 302
| || ||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 334 TCGCCTGTTGGCCACAATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATC 393
Query 303 CCATGCCCAAACGCCAACTTTGGATGCACCAAAAG--TATATCTTATGGGAAAGAATCAA 360
|| || || |||||||| || || |||| ||||| | |||||||||||||||| | ||
Sbjct 394 CCGTGTCCGAACGCCAAGTTAGGTTGCA--AAAAGAATGTATCTTATGGGAAAGAGTTAA 451
Query 361 CTCATGAAAAGGAATGCATCTTCTCTCAATGCTATTGCCCTGCATTGAATTGCAATTACA 420
||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||
Sbjct 452 CTCATGAAAAGGAATGCATGTTCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACA 511
Query 421 CTAGCTCATACAAGGATCTCTACACTCACTATCGTACAACCCACATGGAAGTAGACCAGC 480
||||||||||||||||||| |||||||||||||||| ||||| |||||| || |||||
Sbjct 512 CTAGCTCATACAAGGATCTGTACACTCACTATCGTATTACCCATATGGAAATAAACCAGA 571
Query 481 TTAATAAGTACATTTGTGACATTCCCTTTAGTGTCCGGATGAACATCGGCAGCGATAAGA 540
|||||| || |||||||||||||||||| |||||||||||||||||| ||| | ||||
Sbjct 572 TTAATACGTTCATTTGTGACATTCCCTTAAGTGTCCGGATGAACATCAGCAA--A-AAGA 628
Query 541 ATATAATAATTAGAAAGGAATACACAAAGAGACTC-TT-GTTTGCAGTGCAATGTTTTAG 598
||| | ||||||| |||| || | || | || || |||||||||||| ||||| ||
Sbjct 629 -TAT--TGATTAGAACGGAACACTTGACGA-A-TCATTTGTTTGCAGTGCAGTGTTTCAG 683
Query 599 GGAGCCGTGTGGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCTGAAGTAGG 658
|||||||| ||||||||||||||| |||||||||||||| |||||| |||| ||| || |
Sbjct 684 GGAGCCGTATGGTGTGTATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAG 743
Query 659 ACAGTTCTCATAT-CATCTCTCCTACACTGTGGATGGACACACTATAACTTATGAATCAC 717
|||| ||||||| | |||||| |||||||| |||||||||||| | | ||| ||||||
Sbjct 744 TCAGTACTCATATGC-TCTCTCTTACACTGTCGATGGACACACTGTGATTTACCAATCAC 802
Query 718 CCGAGGTGAAGAGAATTCTTAAAGT-GAGCTCCCAAAGACCTCAAGAGA 765
| ||||||||||| ||||||| || ||| | |||| || |||||||
Sbjct 803 CAGAGGTGAAGAGGGTTCTTAA-GTTGAGTTTTCAAACCCCGCAAGAGA 850
> AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831
Score = 508 bits (275), Expect = 3e-143
Identities = 533/652 (82%), Gaps = 40/652 (6%)
Strand=Plus/Plus
Query 114 GATTTTGATGTTCTCGATTGTCCTGTTTGCT-TCG-AGCCACTCACTATTCCTATCTTCC 171
||| ||||| | |||||||||||| |||||| | | || || | || | |||||||||||
Sbjct 94 GATCTTGATATCCTCGATTGTCCTATTTGCTGT-GAAG-CATTGACGAGTCCTATCTTCC 151
Query 172 AGTGTGATAATGGGCATTTGGCTTGCTCTTCTTGCTGTCCCAAACTGAGTAATAAGTGCC 231
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 152 AGTGTGATAATGGGCATTTGGCTTGCGGTTCTTGCTGTCCCAAACTGAGTAATAAGTGCC 211
Query 232 CTACATGTACTTTGCATGTTGG-CAACAAACGTTGCAGAGCAATGGAGAGTGTTCTTGAA 290
|| |||||||||||| |||||| || || || ||||||||||||||||||||||||||
Sbjct 212 CTGCATGTACTTTGCCTGTTGGTCA-CAGTCGCAGCAGAGCAATGGAGAGTGTTCTTGAA 270
Query 291 TCAATCTTT-ATCCCATGCCCAAACGCCAACTTTGGATGCACCAAAAGTATATCTTATGG 349
|| || ||| |||||||||||||||| || ||||| || ||||| ||| | | ||||||
Sbjct 271 TCTAT-TTTGATCCCATGCCCAAACGTCAGGTTTGGTTGTACCAAGAGTTTCTTTTATGG 329
Query 350 GAAAGAATCAACTCATGAAAAGGAATGCATCTTCTCTCAATGCT-ATTGCCCTGCATTGA 408
|||||| ||| |||||||||| |||||||||||||||||||||| || ||||| ||| |
Sbjct 330 GAAAGAGTCAGCTCATGAAAAAGAATGCATCTTCTCTCAATGCTCAT-GCCCTTCATCGG 388
Query 409 AT-TGCAATTACACTAGCTCATACAAGGATCTCTACACTCACTATCGTACA-ACCCACAT 466
| ||| |||||||| |||||||||||||||||||| |||||||| || || ||| |
Sbjct 389 -TCTGCGATTACACTGGCTCATACAAGGATCTCTACGCTCACTATAA-ACTGACTCAC-T 445
Query 467 GGAAGTAGACCAGCTT-AATA--A-GTACATT---TGTGACA-TTCCCTTTA-GTG-TCC 516
| | | | || |||| | | | || |||| || || | |||| | |||
Sbjct 446 CCACGAATATTTTCTGGAATATTAAGCGCTTTAGATGTGCCAATTTC-TTTACGACCTCC 504
Query 517 GGATGAACATCGGCAGCGATAAGAATATAATAATTAGAAAGGAATACAC-A-AAGAGACT 574
||| |||| |||||||||| || |||||| ||||| |||| | |||| |||
Sbjct 505 --ATGCTCATC---AGCGATAAGA-TAC--TAATTA-AAAGGG-TACATGAGAAGAAACT 554
Query 575 CTTGTTTGCAGTGCAATGTTTTAGGGAGCCGTGTGGTGTGTATGTAACCGTAAGCTGCAT 634
||| |||||||||| ||||||||||| ||||||||||||||||| || ||||||| |||
Sbjct 555 ATTGCTTGCAGTGCAGTGTTTTAGGGAACCGTGTGGTGTGTATGTGACTGTAAGCTTCAT 614
Query 635 TGCACCATCTGCTCCTGAAGTAGGACAGTTCTCATATCATCTCTCCTACACTGTGGATGG 694
||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 615 TGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATCAACTCTCCTACAATGTGGATGG 674
Query 695 ACACACTATAACTTATGAATCACCCGAGGTGAAGAGAATTCT-TAAAGTGAG 745
||||||| | ||||||||||| || ||||||||||| || | |||||||||
Sbjct 675 ACACACTGTGACTTATGAATCTCCGGAGGTGAAGAGGGTT-TGTAAAGTGAG 725
> AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:15093903-15094802
REVERSE LENGTH=726
Length=726
Score = 272 bits (147), Expect = 4e-72
Identities = 398/514 (77%), Gaps = 38/514 (7%)
Strand=Plus/Plus
Query 271 CAATGGAGAGTGTTCTTGAATCAATCTTTATCCCATGCCCAAACGCCAACTTTGGATGCA 330
||||||||| | |||||||||| || || || |||||||||||| || ||||| ||||
Sbjct 146 CAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGACATGTTTGGTTGCA 205
Query 331 CCAAAAGTATATC-T-TATGGGAAAGAATCAACTCATGAA-AAGGAATGCATCTTCTCTC 387
|| | ||| | || | ||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 206 CCGAGAGT-T-TCTTATATGGGAAAAAATCAACTCATGAAGAA-GAATGCATTTTCTCTC 262
Query 388 AATGCT-ATTGCCCTGCATTGAATTGCAATTACACTAGCTC-ATACAAGGATCTCTA-CA 444
||||| | |||||| ||||| | || | ||| | || | |||| |||||||||| |
Sbjct 263 TATGCTCA-TGCCCTTCATTGGACTGTGAGTACTCCGGC-CGATACGAGGATCTCTATGA 320
Query 445 CTCACTATCGTAC-AACCCACA--TGGAAGT-AGACCAG-CTTAATAAGTACATTT-G-T 497
||||||| || || |||| | ||| | | || | | | ||| | | ||| | |
Sbjct 321 -TCACTAT-AAACTGACTCACATCTCGAACTCATACTGGAC-CACTAACTGC-TTTAGAT 376
Query 498 -GA-CATTCCCT-TTAGTGTCCGGATGAACATCGGCAGCGATAAGAATATAATAATTAGA 554
| |||||| | | || | || |||| | | |||||||||| ||| | ||||| |
Sbjct 377 CTAGCATTCCATATAAG-GCCCCGATG--C-TTATCAGCGATAAG-ATA-CA-AATTACA 429
Query 555 AAGGAATACACA-AAGAGACTCTTGTTTGCAGTGCAATGTTTTAGGGAGCCGTGTGGTGT 613
| || ||| | |||| | | |||||||||||||| |||||||||||| ||||||||||
Sbjct 430 AGGGTATA-TGAGAAGAAAATATTGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGT 488
Query 614 GTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCTGAAGTAGGACAGTTCTCATATCA 673
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 489 GTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTTGGACAGTTCTCATATCA 548
Query 674 TCTCTCCTACACTGTGGATGGACACACTATAACTTAT-GAATCACC-CGAGGTGAAGAGA 731
|||||||||||||||||| ||||||||| ||| || ||||| | | |||||||
Sbjct 549 AATCTCCTACACTGTGGATGAACACACTATGGTTTACAGA-TCACCACAAA-TGAAGAGG 606
Query 732 ATTCTTAAAGTGAGCTCCCAAAGACCTCAAGAGA 765
||| ||||||||| | ||| |||||||||||
Sbjct 607 GTTCGTAAAGTGAGTTTTGAAACACCTCAAGAGA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5