BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947478
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated... 488 3e-137
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 209 3e-53
> AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated
channel 7 | chr1:5491304-5493772 REVERSE LENGTH=2130
Length=2130
Score = 488 bits (264), Expect = 3e-137
Identities = 430/502 (86%), Gaps = 44/502 (9%)
Strand=Plus/Plus
Query 219 CTTCTCAAGAGCAATTGTTCTGCTAAAGGAGATGATTCAAAGTTTAACTTTGGGATATAC 278
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 913 CTTCTTAAGAGCAATTGTTCTGCTAAAGCAGATGATTCAAAGTTTAACTATGGGATATAC 972
Query 279 GGTCAAGCTATATCTT----C-----a--a--aa-aa-a---TTCTCCAAGTTCTGTTAT 320
||||| |||||||||| | | | || || | ||||||||||||||||||
Sbjct 973 GGTCAGGCTATATCTTCAGGCATTGTATCATCAACAACATTTTTCTCCAAGTTCTGTTAT 1032
Query 321 TGTATATGGTGGAGTTTTCAAAATCT-----C---AGGTCAAGGGCTGCAAACAAGTACA 372
||| |||||||| || |||||||||| | ||||||||||||||| |||||||||
Sbjct 1033 TGTCTATGGTGGGGTCTTCAAAATCTCAGCACGTTAGGTCAAGGGCTGCAGACAAGTACA 1092
Query 373 TTTCCAGGAGAGGTTTTGTTTTCCAGCGCG-TTAGGTCA-A---GGGTTTCTTC-TTTCG 426
||||||||||||||||||||||||| ||| || | | | | ||| |||||| |||||
Sbjct 1093 TTTCCAGGAGAGGTTTTGTTTTCCATTGCGATT-GCT-ATAGCTGGGCTTCTTCTTTTCG 1150
Query 427 CGCTTCTAC-TCGGGAATATGCAGACCTATCTTCATTTACTTACTGTTCGTCTCGACGAA 485
||||||| | |||||||||||||||| |||||||| | |||||||||||||||||| |||
Sbjct 1151 CGCTTCT-CATCGGGAATATGCAGACTTATCTTCAGTCACTTACTGTTCGTCTCGAGGAA 1209
Query 486 ATGAGGATCAAAAGATGTGACTCGGAACA---G-T--ATCACAGGTCACTTCCACAAAAT 539
||||||||||||||| ||||||| ||||| | | |||||||||||||||||||||||
Sbjct 1210 ATGAGGATCAAAAGACGTGACTCAGAACAGTGGATGCATCACAGGTCACTTCCACAAAAT 1269
Query 540 TTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACCAGAGGTGTTA-A 598
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1270 TTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACAAGAGGTGT-AGA 1328
Query 599 GGAAGAAAATTTAGTTCAGAGTTTAGCTACGGATCTCAGAAGAGACATCAAACGTCATCT 658
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 1329 CGAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGAAGAGACATCAAACGCCATCT 1388
Query 659 TTGCCTGAGTTTAGTTAGGAGG 680
|| |||| |||||||||||||
Sbjct 1389 CTGTCTGAATTTAGTTAGGAGG 1410
> AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225376-16227709 FORWARD LENGTH=1665
Length=1665
Score = 209 bits (113), Expect = 3e-53
Identities = 128/135 (95%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 732 GATGAGTTCAAAGAATTCTTTATGCAATTTGGAGAGCTGAAAGAACATCAGATTATGCGT 791
||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 GATGAATTCAAGGAGTTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGT 596
Query 792 GATCATTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAAGTGAAGATAT 851
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAA-GTGAAGATAT 655
Query 852 GGTTCATCATCTCTT 866
|||| ||||||||||
Sbjct 656 GGTTGATCATCTCTT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42246917627
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5