BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947485

Length=750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61500.1 | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5...   475    2e-133
  AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt...   206    3e-52 
  AT5G23600.1 | Symbols:  | RNA 2'-phosphotransferase, Tpt1 / Kpt...   180    2e-44 


> AT5G61500.1 | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24733785-24736853 
REVERSE LENGTH=1413
Length=1413

 Score =  475 bits (257),  Expect = 2e-133
 Identities = 301/323 (93%), Gaps = 0/323 (0%)
 Strand=Plus/Plus

Query  229  CCATACTTGCCCTCAGACAAACAGTTTTTGATTACTAGAAATGTACCTTGTCTACGGAGA  288
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  332  CCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATGTACCTTGTCTACGGAGA  391

Query  289  GCTGCATCTGTGGCTGAGGAATATGAAGCTGCTGGAGGTGAAGTATTGGTTGATGATGAA  348
            ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  392  GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAA  451

Query  349  GATAATGATGGTTGGCTAGCGACACATGGGAAACCGAAAGATAAAGGAAACGAAGATGAA  408
            ||||||||||||||||| || |||||||||||||||||||||||||| || ||||| || 
Sbjct  452  GATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGATAAAGGCAAGGAAGAGGAT  511

Query  409  AACTTGCCATCAATGGATGTCTTGGATATAAACGAGAGAAACGCTATCCAATCAATACCC  468
            ||||| ||||| ||||||| ||||||||||||||||| |||  |||||||||||||||| 
Sbjct  512  AACTTACCATCCATGGATGCCTTGGATATAAACGAGAAAAATACTATCCAATCAATACCT  571

Query  469  ACGTATTTTGGAGGTGAGGAAGATGATGATATTCCAGACATGGAAGAGTTTGACGAGGCT  528
            |||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct  572  ACGTATTTTGGAGGTGAGGAGGATGATGATATTCCAGACATGGAGGAGTTCGATGAGGCT  631

Query  529  GACAATGTGGTAGAAAATGATCC  551
            |||||||||||||||||||||||
Sbjct  632  GACAATGTGGTAGAAAATGATCC  654


 Score =  102 bits (55),  Expect = 4e-21
 Identities = 65/70 (93%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  1    TTTAAAGGGACAGTGGAGAGAATGACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAG  60
            |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  173  TTTAAAGGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAG  232

Query  61   GGAGTACTCA  70
            ||||| ||||
Sbjct  233  GGAGTTCTCA  242


> AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1 
/ KptA family | chr2:18686336-18688035 FORWARD LENGTH=1035
Length=1035

 Score =  206 bits (111),  Expect = 3e-52
 Identities = 134/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  603  AGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATTTTGACTGAAGGAATTGATGG  662
            |||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  748  AGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATTTTGACTGAAGGCATTGATGG  807

Query  663  TGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGAAAA-CCTATAC  721
            |||| |||||||||||||||||||||||||||||||||||||||||||  || || ||||
Sbjct  808  TGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGGCAATCC-ATAC  866

Query  722  CTTTCTGATTCACAGAACTCAACAT  746
            |||||||||||| | || |||||||
Sbjct  867  CTTTCTGATTCATATAATTCAACAT  891


> AT5G23600.1 | Symbols:  | RNA 2'-phosphotransferase, Tpt1 / KptA 
family | chr5:7955994-7956632 FORWARD LENGTH=639
Length=639

 Score =  180 bits (97),  Expect = 2e-44
 Identities = 118/128 (92%), Gaps = 2/128 (2%)
 Strand=Plus/Plus

Query  603  AGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATTTTGACTGAAGGAATTGATGG  662
            |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct  513  AGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATTTTGACTCAAGGCATTGTTGG  572

Query  663  TGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGAAAA-CCTATAC  721
            |||  |||||||||||||||||||||||||||||||||||||||||||  || || ||||
Sbjct  573  TGTCTTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGGCAATCC-ATAC  631

Query  722  CTTTCTGA  729
            ||||||||
Sbjct  632  CTTTCTGA  639



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36419756575


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5