BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947487

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   327    2e-89


> AT5G42110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant 
structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast 
hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:16831728-16832279 REVERSE 
LENGTH=465
Length=465

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 215/232 (93%), Gaps = 7/232 (3%)
 Strand=Plus/Plus

Query  1    CGTCGTCGGATCC---GAAGAAGATGAAGATTTCGAGCGGTATGGTCGCTTCTGTCATTG  57
            |||||||||||||   ||||||||||||| |||| |||||| ||||||||||||||||||
Sbjct  31   CGTCGTCGGATCCGAAGAAGAAGATGAAGGTTTCAAGCGGTGTGGTCGCTTCTGTCATTG  90

Query  58   CCGTCTCCACCGCTGCCCTCTCTTCTTCCTCCACTCTTCCTCCAATCTCCCCAAAGGTTT  117
            |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct  91   CCGTCTCCACCGCTGCTCTCTCTTCTTCCTCCATTCTTCCTCCAGTCTCCCCAAAGGTTT  150

Query  118  GGGAATCGAGGAAGACGAATGGGTCGGAGAATTTTGAGCCGAGGTTTGATGGGTTAAGGT  177
            ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  151  GGGAATCGAGGAAAACGAATGGGTCGGACAATTTCGAGCCGAGGTTTGATGGGTTAAGGT  210

Query  178  TCATAGAGACGCTGGTCACAGCACACAGAT-A---GATTTCAAATACCATTC  225
            |||||||||||||||||||||||||||||| |   |||| ||||||||||||
Sbjct  211  TCATAGAGACGCTGGTCACAGCACACAGATGATAAGATTACAAATACCATTC  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10304888545


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5