BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947488
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42100.1 | Symbols: ATBG_PPAP, ATBG_PAP, BG_PPAP | beta-1,3-... 1997 0.0
> AT5G42100.1 | Symbols: ATBG_PPAP, ATBG_PAP, BG_PPAP | beta-1,3-glucanase_putative
| chr5:16829151-16831219 REVERSE LENGTH=1638
Length=1638
Score = 1997 bits (1081), Expect = 0.0
Identities = 1248/1328 (94%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 2 ctctctctctctctctctcacttcatccatggcttctccttcttct-cagtttctcttct 60
||||||||||||||||||||||||||| ||||||||| |||| ||| |||| ||||||||
Sbjct 24 CTCTCTCTCTCTCTCTCTCACTTCATCTATGGCTTCTTCTTC-TCTGCAGTCTCTCTTCT 82
Query 61 ctctgttgtgccttgctctcctt-tctcttcctcacatcgtctcctccATCGGCATCAAC 119
||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 83 CTCTGTTTTGCCTTGCTCT-GTTCTCTCTTCCTCTCATCGTCTCCTCCATCGGCATCAAC 141
Query 120 TATGGCCAGGTCGCTAACAACCTTCCTCCCCCAAAAAACGTCATCCCTCTCCTCAAGTCT 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 142 TATGGCCAGGTCGCTAACAACCTTCCTCCCCCTAAAAACGTCATCCCTCTCCTCAAGTCT 201
Query 180 GTGGGAGCTACAAAAGTCAAGCTCTATGACGCCGATCCACAAGCCCTCCGTGCCTTCTCC 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 202 GTGGGAGCTACAAAAGTCAAGCTCTATGACGCCGATCCACAAGCCCTACGTGCCTTCGCC 261
Query 240 GGCTCCGGCTTCGAGCTCACCGTGGCCCTCGGCAACGAGTACCTGGCCCAGATGACCGAC 299
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 262 GGCTCCGGCTTCGAGCTCACCGTGGCCCTCGGTAACGAGTACCTGGCTCAGATGAGCGAC 321
Query 300 CCTAATAAAGCCCAAGCCTGGGTGAAGGAGAACGTTCAAGCATACCTCCCCAACACCAAG 359
|||| ||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 322 CCTATTAAAGCCCAAGGCTGGGTGAAGGAGAACGTCCAAGCTTACCTCCCAAACACCAAG 381
Query 360 ATCGTGGCCATCGTAGTGGGAAACGAAGTCCTCACCTCCAACCAATCAGCCCTCACGGCG 419
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 382 ATCGTGGCCATCGTAGTGGGAAACGAAGTCCTCACCTCAAACCAGTCAGCCCTCACGGCA 441
Query 420 GCCCTCTTCCCGGCTATGCAGGGCATCCACGGCGCTCTGGTTGATTGTGGCCTGAACAAG 479
|||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||
Sbjct 442 GCCCTCTTCCCGGCTATGCAAAGCATCCACGGTGCTCTGGTGGATTGTGGCCTAAACAAG 501
Query 480 CAGATCTTTGTGACGACGGCTCACTCACTGGCCATCTTGGATGTGTCCTACCCTCCCTCG 539
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 502 CAGATCTTTGTGACGACGGCTCACTCACTAGCCATCTTGGATGTATCCTACCCTCCCTCG 561
Query 540 GCCACTTCCTTCCGCCGCGACCTTCTCAGCTCTCTCACTCCCATCTTGGACTTCCACGTC 599
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 562 GCCACTTCCTTCCGCCGCGACCTCCTCGGCTCCCTCACTCCCATCTTGGACTTCCACGTC 621
Query 600 AAGACAGGCTCACCAATCCTCATCAACGCCTACCCTTTCTTCGCCTACGAAGAAAACCCC 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AAGACTGGCTCACCAATCCTCATCAACGCCTACCCTTTCTTCGCCTACGAAGAAAACCCC 681
Query 660 AAACACGTCTCTCTCGACTTCGTCCTCTTCCAACCAAATCAAGGCTTCACCGACCCTGGC 719
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 682 AAACACGTTTCTCTCGACTTCGTACTCTTCCAACCAAATCAAGGCTTCACCGATCCTGGC 741
Query 720 TCTAATTTCCACTACGACAACATGCTCTTCGCTCAGGTCGACGCAGTCTATCACGCCCTT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 TCTAATTTCCACTACGACAACATGCTCTTCGCTCAGGTCGACGCAGTCTATCACGCTCTT 801
Query 780 GACGCTGTCGGCATCAGCTACAAGAAAGTCCCCATAGTCGTCTCCGAGACCGGATGGCCT 839
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 802 GACGCTGTCGGCATCAGCTACAAGAAAGTTCCCATTGTCGTCTCCGAGACCGGATGGCCT 861
Query 840 TCCAACGGTGACCCGCAGGAGGTTGGAGCAACCTGCGACAATGCTCGCAAGTACAATGGG 899
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 862 TCCAACGGTGACCCGCAAGAAGTCGGAGCCACCTGCGACAATGCTCGCAAGTACAATGGG 921
Query 900 AATCTGATCAAGATGATGATGAGCAAGAAAATGAGGACGCCCATTCGACCTGAGTGCGAT 959
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 922 AATCTGATCAAGATGATGATGAGCAAGAAGATGAGGACGCCTATACGACCTGAGTGCGAT 981
Query 960 CTCACCATCTTTGTCTTTGCTCTCTTCAACGAGAACATGAAGCCTGGACCCACCTCCGAG 1019
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 982 CTCACCATCTTCGTCTTTGCTCTCTTTAACGAGAACATGAAGCCTGGACCAACCTCCGAG 1041
Query 1020 AGGAACTACGGTCTCTTCAAACCTGACGGAACTCCGGTTTACTCTCTTGGGATCAAGACT 1079
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1042 AGGAACTACGGTCTCTTCAACCCTGACGGAACTCCGGTTTACTCACTTGGGATCAAGACC 1101
Query 1080 TCCTCCACTCATACTAGTGGTAG------CAGCAACTCCACTGGTGGTAGTGGTAGTAGC 1133
|| |||||||||| ||||||||| |||||||||||||||||||||| | ||| ||
Sbjct 1102 TCTTCCACTCATAGTAGTGGTAGTGGTAGCAGCAACTCCACTGGTGGTAGTAGCAGTGGC 1161
Query 1134 AGCGGCGGTAACACTGGTGGCTCTTCCGGCGGTGGTGGTATCTACCCGCCGGTCACGGAT 1193
| |||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| |
Sbjct 1162 GGTGGCGGTAACACTGGTGGCTCTTCCAGCGGTGGTGGCATCTATCAGCCAGTCACGGGT 1221
Query 1194 AACCCATCGCCGGATTACATGTCCATTTCCTCCGCCGGGGGAAAAGGCAGATTCGTTGAG 1253
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AACCCATCACCGGATTACATGTCCATTTCCTCCGCCGGGGGAAAAGGCAGATTCGTTGAG 1281
Query 1254 TGTGTGTTCTTCTTCTTCCTGCTTTGCATCATCAAGCTTCGGTTGTAAAAGCAGCTTCCC 1313
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1282 TGTGTGTTGTTCTTCTTCTTGCTTTGCATCATCAAGCTTCGGTTGTAAAAGC---TTCTC 1338
Query 1314 CACTAGAT 1321
||||||||
Sbjct 1339 CACTAGAT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5