BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947489
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42090.1 | Symbols: | Lung seven transmembrane receptor fam... 2215 0.0
AT5G42092.1 | Symbols: | Potential natural antisense gene, loc... 614 9e-175
> AT5G42090.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr5:16826698-16828454 FORWARD LENGTH=1757
Length=1757
Score = 2215 bits (1199), Expect = 0.0
Identities = 1303/1353 (96%), Gaps = 8/1353 (1%)
Strand=Plus/Plus
Query 10 CCTTGTTCTCCATGGATTTCTCTTCACGCTTCTCATCGATCGTTCTCCTTCTCTTCATCT 69
||| |||| |||||||| ||||||||||||||||||||||| || |||||||||| ||||
Sbjct 123 CCTAGTTC-CCATGGATCTCTCTTCACGCTTCTCATCGATCCTTATCCTTCTCTTGATCT 181
Query 70 CCATCTCCATAGCTTCTGG-TGAGATTCGCAAATCAGAGATCCGATCCGATGACCGACCC 128
|||||||||||||||| || ||||||||| ||||||||||||||||||||||| || ||
Sbjct 182 CCATCTCCATAGCTTC-GGCTGAGATTCGTAAATCAGAGATCCGATCCGATGATCGTCCA 240
Query 129 ATCATCCCTTTAGACGAATTCGGTTTCACTCACACG-GGTCGTCTCGAGCTTGACGCTTC 187
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 241 ATCATCCCTTTAGACGAATTCGGTTTCACTCACA-GCGGTCGTCTTGAGCTTGACGCTTC 299
Query 188 CAAGATCTCGCTTTCCAACACCAATCCCGATCTAGATCTCTCCAAAGTCGGCTTCTTTCT 247
|||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 300 CAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCTTTCT 359
Query 248 CTGCACTAGAGACGCTTGGGTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACATG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CTGCACTAGAGACGCTTGGGTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACGTG 419
Query 308 CGCTCTACAATCAGATCTCGTTAAGCATGTCTTCACCTTCAACAATCTCAA--G-GGAGA 364
|||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 420 CGCTCTACAATCAGATCTCGTTAAGCATGTGTTCACCTTCAACAATCTCAAGGGAGGAGA 479
Query 365 TAAGAGCAGATTCTCCACCGTATTCACCGAGAACGATGCCGATCAGTACTCTCTCGTCTT 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TAAGAGCAGATTCTCCACCGTATTCACCGAGAACGATGCGGATCAGTACTCTCTCGTCTT 539
Query 425 CGCTAATTGCCTCCAACAGGTCAAAATCAGTATGGATGTTAGATCTGCTATGTATAACCT 484
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 CGCTAATTGTCTCCAACAGGTCAAAATCAGTATGGATGTTAGATCCGCTATGTATAACCT 599
Query 485 TGAAGGTAAAAAGGGTGGTCGTGATTATCTCTCTGCTGGAAGAACTGTTCTCCCAAAGGT 544
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 600 TGAAGGTAAAAAGGGAGGTCGTGATTATCTCTCTGCTGGAAGAACTGTTCTTCCTAAGGT 659
Query 545 CTATTTCTTCTTCTCTGTTATCTATTTCTCTCTCGCTGCGACGTGGATCTACGTTCTCTA 604
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 660 CTATTTCTTATTCTCTGTTATCTATTTCTCTCTCGCCGCCACGTGGATCTACGTTCTCTA 719
Query 605 TAAGAAACGTCTCACTGTTTTCGCAATCCATTTCTTCATGTTGGGAGTTGTTGTCTTGAA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAGAAACGTCTCACTGTTTTCGCAATCCATTTCTTCATGTTGGGAGTTGTTGTCTTGAA 779
Query 665 AGCTTTGAACCTTCTTTGTGAGGCTGAGGATAAGTCGTATATTAAGAAAACTGGAACAGC 724
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 780 AGCTTTGAACCTTCTTTGTGAGGCTGAGGATAAGTCGTACATTAAGAAAACTGGAACTGC 839
Query 725 TCATGGTTGGGATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTATCACTCTTTTCAC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCATGGTTGGGATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTATCACTCTTTTCAC 899
Query 785 TTTGATCGTCTTGATCGGCACGGGTTGGTCTTTCTTGAAGCCCTACTTGCAGGACAAGGA 844
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGATCGTCTTGATCGGCACCGGTTGGTCTTTCTTGAAGCCCTACTTGCAGGACAAGGA 959
Query 845 AAAGAAGGTCTTGATGATTGTGATTCCTCTCCAGGTTGTGGCTAACTTTGCTCAGGTAGT 904
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 960 AAAGAAGGTCTTGATGATTGTCATTCCTCTCCAGGTTGTCGCTAACTTTGCTCAGGTGGT 1019
Query 905 TATCGATGAGACTGGACCATATGGCCAAGATTGGGTCACATGGAAACAGATCTTTTTGCT 964
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 TATCGATGAGACTGGACCGTATGGCCAAGATTGGGTCACGTGGAAACAGATCTTTTTGCT 1079
Query 965 TGTTGATGTCGTCTGTTGCTGTGCTGTTCTGTTTCCCATTGTGTGGTCCATCAAAAACTT 1024
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TGTTGATGTCGTCTGTTGCTGTGCTGTTCTGTTTCCCATTGTCTGGTCCATCAAAAACTT 1139
Query 1025 GCGTGAGGCCGCTAAGACTGACGGGAAGGCTGCTGTGAACCTGGTTAAGTTAACTCTGTT 1084
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 GCGTGAGGCGGCTAAGACTGACGGGAAGGCTGCTGTGAACCTCGTTAAGTTAACTCTGTT 1199
Query 1085 TAGGCAGTACTACATTGTGGTTATCTGCTACATCTACTTTACTCGTGTTGTTGTGTATGC 1144
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 TAGGCAGTACTACATTGTGGTTATCTGCTACATCTACTTCACTCGTGTTGTTGTGTATGC 1259
Query 1145 ACTGGAGACCATTACCTCTTACAAGTATATGTGGACTAGTGTTGTTGCCAGCGAGTTAGC 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACTGGAGACCATTACCTCTTACAAGTATATGTGGACTAGTGTTGTTGCCAGCGAGTTAGC 1319
Query 1205 CACACTTGCGTTCTATCTGTTTACTGGCTACAAGTTCAGGCCAGAGGTGCATAACCCATA 1264
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 CACACTTGCCTTCTATCTGTTTACTGGCTACAAGTTCAGGCCAGAGGTGCATAACCCGTA 1379
Query 1265 CTTTGTTGTTGATGATGAGGAAGAAGAGGCTGCAGCTGAGGCCCTGAAGCTTGAAGACGA 1324
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1380 CTTTGTTGTTGACGATGAGGAAGAAGAGGCTGCTGCTGAGGCTCTGAAGCTTGAAGACGA 1439
Query 1325 GTTTGAATTGTAAGTCATCACTGGAATAATCGT 1357
|||||||||||||||||||||||||||||||||
Sbjct 1440 GTTTGAATTGTAAGTCATCACTGGAATAATCGT 1472
> AT5G42092.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT5G42090 | chr5:16826838-16827583 REVERSE
LENGTH=493
Length=493
Score = 614 bits (332), Expect = 9e-175
Identities = 380/402 (95%), Gaps = 7/402 (2%)
Strand=Plus/Minus
Query 29 CTCTTCACGCTTCTCATCGATCGTTCTCCTTCTCTTCATCTCCATCTCCATAGCTTCTGG 88
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct 493 CTCTTCACGCTTCTCATCGATCCTTATCCTTCTCTTGATCTCCATCTCCATAGCTTC-GG 435
Query 89 -TGAGATTCGCAAATCAGAGATCCGATCCGATGACCGACCCATCATCCCTTTAGACGAAT 147
||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 434 CTGAGATTCGTAAATCAGAGATCCGATCCGATGATCGTCCAATCATCCCTTTAGACGAAT 375
Query 148 TCGGTTTCACTCACACG-GGTCGTCTCGAGCTTGACGCTTCCAAGATCTCGCTTTCCAAC 206
||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 374 TCGGTTTCACTCACA-GCGGTCGTCTTGAGCTTGACGCTTCCAAGATCTGGCTTTCCAAC 316
Query 207 ACCAATCCCGATCTAGATCTCTCCAAAGTCGGCTTCTTTCTCTGCACTAGAGACGCTTGG 266
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 315 AGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCTTTCTCTGCACTAGAGACGCTTGG 256
Query 267 GTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACATGCGCTCTACAATCAGATCTC 326
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 GTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACGTGCGCTCTACAATCAGATCTC 196
Query 327 GTTAAGCATGTCTTCACCTTCAACAATCTCAAGGGAG-A--TAAGAGCAGATTCTCCACC 383
||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 195 GTTAAGCATGTGTTCACCTTCAACAATCTCAAGGGAGGAGATAAGAGCAGATTCTCCACC 136
Query 384 GTATTCACCGAGAACGATGCCGATCAGTACTCTCTCGTCTTC 425
|||||||||||||||||||| |||||||||||||||||||||
Sbjct 135 GTATTCACCGAGAACGATGCGGATCAGTACTCTCTCGTCTTC 94
Score = 169 bits (91), Expect = 8e-41
Identities = 95/97 (98%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 675 CTTCTTTGTGAGGCTGAGGATAAGTCGTATATTAAGAAAACTGGAACAGCTCATGGTTGG 734
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 97 CTTCTTTGTGAGGCTGAGGATAAGTCGTACATTAAGAAAACTGGAACTGCTCATGGTTGG 38
Query 735 GATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTA 771
|||||||||||||||||||||||||||||||||||||
Sbjct 37 GATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5