BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947495

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42060.1 | Symbols:  | DEK, chromatin associated protein | c...   438    1e-122


> AT5G42060.1 | Symbols:  | DEK, chromatin associated protein | 
chr5:16818388-16818955 REVERSE LENGTH=568
Length=568

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 295/322 (92%), Gaps = 7/322 (2%)
 Strand=Plus/Plus

Query  1    GGTTTCT-T-TGTCGGCGAGAGATGACATCAATGGAGGAAGTAGCGAGAGAAGAAGTAGA  58
            ||||||| | ||||||||||| ||  ||||||||||||||||||||||||||||||||||
Sbjct  5    GGTTTCTCTCTGTCGGCGAGACAT--CATCAATGGAGGAAGTAGCGAGAGAAGAAGTAGA  62

Query  59   GATCGACAAGGATCTGCAGAGGAAAATAGAGAGGACGGTGAAGAAGATCTTGGAAAGTTC  118
            ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct  63   GATCGACAAGGATCTGCGGAGGAAAATAAAGAAGACGGTGAAGAAGATCTTGGAAAGTTC  122

Query  119  AAACTTGTACAAGATAACAGAGATCAAGGCGCGAGAAGAAGCTTCACTTGAATTGGATCT  178
             ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  123  GAACTTGTACAAGATAACAGAGATTAAGGCGCGAGAAGAAGCTTCACTTAAATTGGATCT  182

Query  179  TGATCTCTCTCAAGATCCTTACAAGGTAATCGTGAGAGAAGTTGTTGAAAGTTTCCTCGA  238
            |||||| |||||||||||||||||||||||||||| |||||  ||||||| |||||||||
Sbjct  183  TGATCTGTCTCAAGATCCTTACAAGGTAATCGTGAAAGAAGAAGTTGAAAATTTCCTCGA  242

Query  239  AGAAGCCGTAAAGGTAATCGGCAATAGGCTTGCGATGCTTCCGGAGAGGATAGAGTCGA-  297
            |||||| |||||| | ||||||||||  ||||||||||||||  |||| |||||||||| 
Sbjct  243  AGAAGCAGTAAAGTTGATCGGCAATAAACTTGCGATGCTTCCCAAGAGAATAGAGTCGAC  302

Query  298  G--TATTTAGATATTATTAATC  317
            |  |||||||||||||||||||
Sbjct  303  GAGTATTTAGATATTATTAATC  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5