BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947496

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26270.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...  95.3    6e-19


> AT5G26270.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:9206508-9207512 
FORWARD LENGTH=918
Length=918

 Score = 95.3 bits (51),  Expect = 6e-19
 Identities = 100/123 (81%), Gaps = 6/123 (5%)
 Strand=Plus/Plus

Query  210  TTAT-GGAGTTCATTTCTCTTCCCAAAATTCCCT-CT-TGTGAGAAGTGGTTTGGATGTT  266
            |||| |||| | | || |||||||||| |||||| ||  ||| | |||||||||||||| 
Sbjct  577  TTATCGGAGCT-AGTTATCTTCCCAAAGTTCCCTCCTCAGTG-G-AGTGGTTTGGATGTC  633

Query  267  CAATCTTCGCCAATATTGCAAGGATCTTCCTCCCGATTGATGGTCTCCTCGGCCTTTGTT  326
            |||   ||| |  ||||||||||||||||||||||||||||| ||| ||| || |||| |
Sbjct  634  CAAGAGTCGTCGGTATTGCAAGGATCTTCCTCCCGATTGATGTTCTTCTCTGCATTTGAT  693

Query  327  GCA  329
            |||
Sbjct  694  GCA  696



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30140488200


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5