BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947501

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01340.1 | Symbols:  | CHP-rich zinc finger protein-related ...   185    4e-46


> AT4G01340.1 | Symbols:  | CHP-rich zinc finger protein-related 
| chr4:554539-556961 FORWARD LENGTH=681
Length=681

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 122/133 (92%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  445  GAATGTGAAAAGGATCTTTTGCCATATTTATTGCACGGGAAAGACGAGATCTTTGCTGGC  504
            ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| 
Sbjct  448  GAATGTGAAAAGGATCTTTTGTCATATTTGTTGCACGGGAAACACGAGATCTTTGCTGGG  507

Query  505  TTAGATGAAGCATCAGCTGATGCCACTTACATAACTGTTGATAATCTGTGGAATAGTTAC  564
            |||||| ||||||||||||||| ||| |||| | ||||| ||||||||||||||||||||
Sbjct  508  TTAGATAAAGCATCAGCTGATGACACATACAGATCTGTTAATAATCTGTGGAATAGTTAC  567

Query  565  CCGAAAGAAGAGG  577
            |||||||| ||||
Sbjct  568  CCGAAAGACGAGG  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31245639434


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5