BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947503

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42000.1 | Symbols:  | ORMDL family protein | chr5:16799354-...   481    2e-135


> AT5G42000.1 | Symbols:  | ORMDL family protein | chr5:16799354-16801028 
FORWARD LENGTH=913
Length=913

 Score =  481 bits (260),  Expect = 2e-135
 Identities = 297/313 (95%), Gaps = 9/313 (3%)
 Strand=Plus/Plus

Query  1    ATGCGAATCA-AGTATTTGGAATGTGGAATCCAACAACAAATG-C--CATCGTCATTCAA  56
            |||||||||| |||||||||||||||||||||||||||||||| |  |||| ||||||||
Sbjct  604  ATGCGAATCAGAGTATTTGGAATGTGGAATCCAACAACAAATGCCATCATCATCATTCAA  663

Query  57   CTTGTCTGTACTATACAGACATCGAATCCC--AACCGGAGaaaaaaaTGTGTTATTTGGT  114
            | |||||||||||||||||||| |||||||  ||||||||   |||||||||||||||||
Sbjct  664  CATGTCTGTACTATACAGACATTGAATCCCTTAACCGGAG---AAAATGTGTTATTTGGT  720

Query  115  CACATCCCATCATCGCTTATTCAAACCTTTCTACTCTTTGTTTGGGGCTTCTAATCAATT  174
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  CACATCCCATCATCGCATATTCAAACCTTTCTACTCTTTGTTTGGGGCTTCTAATCAATT  780

Query  175  CATATTTGATATCTTATGTGGTTGTCTTAGTTTCTTATTTGTATAATCCCAAAACTGGTT  234
            |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  781  CATATTTGATCTCTTTTGTGGTTCTCTTAGTTTCTTATTTGTATAATCCCAAAACTGGTT  840

Query  235  ACAACAGAAAGTTGTTTAGCGAGCAATCTAGGGTTTGAATGAATAGTTGGGGAAGATTTA  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841  ACAACAGAAAGTTGTTTAGCGAGCAATCTAGGGTTTGAATGAATAGTTGGGGAAGATTTA  900

Query  295  TTTATATATACCG  307
            |||||||||||||
Sbjct  901  TTTATATATACCG  913



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14426843963


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5