BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947504

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42000.1 | Symbols:  | ORMDL family protein | chr5:16799354-...   852    0.0  


> AT5G42000.1 | Symbols:  | ORMDL family protein | chr5:16799354-16801028 
FORWARD LENGTH=913
Length=913

 Score =  852 bits (461),  Expect = 0.0
 Identities = 492/507 (97%), Gaps = 2/507 (0%)
 Strand=Plus/Plus

Query  1    ATCTCTCCGGTG-AAAAGACGATGTACGTAAGAGCACTTCCGACGACGGATGTGAATCGA  59
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  81   ATCCCTCCGGTGAAAAAGACGATGTACGTAAGAGCACTTCCGACGACGGATGTGAATCGG  140

Query  60   AACACAGAGTGGTTCACATATCCAGGTGTTTGGACTACTTATATTCTCATCCTCTTCTTC  119
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  141  AACACAGAGTGGTTCACATATCCTGGTGTTTGGACTACTTATATTCTCATCCTCTTCTTC  200

Query  120  TCTTGGCTCCTTGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTT  179
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  TCTTGGCTCCTCGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTT  260

Query  180  CATCTCGCTCATTTCACCGTCACGTATCATTCGTTTCATTGGAAGAAGGGAACACCGTTT  239
            |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct  261  CATCTCGCTCATTTCACCGTCACGTATCATTCCTTCCATTGGAAGAAGGGAACACCATTT  320

Query  240  GGTGATGATCAAGGAATCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAA  299
            || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  321  GGAGATGATCAAGGAGTCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAG  380

Query  300  CAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTGTACTTGATAGCC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  CAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTGTACTTGATAGCC  440

Query  360  TCTCACACAACAGACTATCAGCACCCGATGCTCTTTCTCAACACACTGGCCGTATTTGTC  419
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  441  TCTCACACAACAGACTATCAGCACCCGATGCTCTTTCTCAACACACTGGCTGTATTTGTC  500

Query  420  ATGGTGGTCGCGAAATTTCCGCACATGCACAAGGTCCGCATATTTGGAATCAATGGAGAC  479
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  ATGGTGGTTGCGAAATTCCCGCACATGCACAAGGTCCGCATATTTGGAATCAATGGAGAC  560

Query  480  CAATGAAAAA-CTTGAGAAAACAAAGA  505
            |||||||||| ||||||||||||||||
Sbjct  561  CAATGAAAAAACTTGAGAAAACAAAGA  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5