BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947508

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41640.1 | Symbols:  | Protein of unknown function (DUF626) ...   180    2e-44
  AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) ...   113    2e-24


> AT5G41640.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr5:16653337-16654635 REVERSE LENGTH=594
Length=594

 Score =  180 bits (97),  Expect = 2e-44
 Identities = 166/196 (85%), Gaps = 17/196 (9%)
 Strand=Plus/Plus

Query  146  AGGGATTCGATACCACTGACGCGAGAT-ATGGTCCTGAACTTCAAAAATCCATCTGTGAT  204
            |||| |||||||| || || ||||| | ||||||||||||||||||||||||||||||||
Sbjct  47   AGGGGTTCGATACTACAGAAGCGAG-TGATGGTCCTGAACTTCAAAAATCCATCTGTGAT  105

Query  205  GAAAGGTGGTCACCATGTTGTACCTTAGTTATCCTTTATGCTAGGATGGGCCTTCATCGT  264
             ||||||||||||| ||||||||||||||   |||||||||||||||||| |||||||||
Sbjct  106  AAAAGGTGGTCACCTTGTTGTACCTTAGTCCGCCTTTATGCTAGGATGGGTCTTCATCGT  165

Query  265  TACAATTTGCTTCAGGGTAAGAATTTACAGCTCAATCGCGTAAAGAAATACAATATGAGT  324
            ||||||||| ||  |   |||  || |  | ||  | |  ||||||||||||||||||||
Sbjct  166  TACAATTTG-TT--G---AAGC-TT-A--G-TCG-T-G--TAAAGAAATACAATATGAGT  210

Query  325  ACGCATTCTGCTGCTT  340
            ||||||| ||||||||
Sbjct  211  ACGCATTATGCTGCTT  226


> AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:9136631-9138052 FORWARD LENGTH=976
Length=976

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 196/258 (76%), Gaps = 22/258 (9%)
 Strand=Plus/Plus

Query  228  CTTAGT-TATCCTTTATGCTAGGATGGGCCTTCATCGTTACAATTTGCTTCAGGGTA-AG  285
            |||||| | | || |||||||   ||||||||||||||||||||||||||||||||| | 
Sbjct  165  CTTAGTCT-TACTCTATGCTACTCTGGGCCTTCATCGTTACAATTTGCTTCAGGGTACA-  222

Query  286  AA-TTTACAGCTCAATCGCGTAAAGAAATACAATATGAGTACGCATTCTGCTGCTTGCAA  344
            || ||| |||||||||||||||||||| |||  | |    |||  | ||||||| | |  
Sbjct  223  AAGTTT-CAGCTCAATCGCGTAAAGAAGTACGTTTTCTCAACGGGTGCTGCTGCCT-C--  278

Query  345  TTACTACATTACTTTGGTTGCTATGGATCCTGCT-C-G-CAGCAAA-CTT---TT-AAA-  395
            ||||||||| ||||||| ||| ||||| || ||| | | |  |    |||   || ||| 
Sbjct  279  TTACTACATAACTTTGGATGCAATGGAACCAGCTGCTGACTCCTCCTCTTCGCTTCAAAC  338

Query  396  -TTTCCAGACTAAAGTTGGTGAAGA-ACGGTTTGGCAAGTTTATTTTGACGTCCGATATT  453
             |||| ||||| ||||    ||||| | | |||||||| |||||| |||||| | |||||
Sbjct  339  CTTTC-AGACTGAAGTAACAGAAGATA-GTTTTGGCAAATTTATTCTGACGTGCAATATT  396

Query  454  GCTAGACCTCGAGGGGAA  471
            || |||  ||||||||||
Sbjct  397  GCAAGAATTCGAGGGGAA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37725844397


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5