BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947508 Length=776 Score E Sequences producing significant alignments: (Bits) Value AT5G41640.1 | Symbols: | Protein of unknown function (DUF626) ... 180 2e-44 AT3G25080.1 | Symbols: | Protein of unknown function (DUF626) ... 113 2e-24 > AT5G41640.1 | Symbols: | Protein of unknown function (DUF626) | chr5:16653337-16654635 REVERSE LENGTH=594 Length=594 Score = 180 bits (97), Expect = 2e-44 Identities = 166/196 (85%), Gaps = 17/196 (9%) Strand=Plus/Plus Query 146 AGGGATTCGATACCACTGACGCGAGAT-ATGGTCCTGAACTTCAAAAATCCATCTGTGAT 204 |||| |||||||| || || ||||| | |||||||||||||||||||||||||||||||| Sbjct 47 AGGGGTTCGATACTACAGAAGCGAG-TGATGGTCCTGAACTTCAAAAATCCATCTGTGAT 105 Query 205 GAAAGGTGGTCACCATGTTGTACCTTAGTTATCCTTTATGCTAGGATGGGCCTTCATCGT 264 ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| Sbjct 106 AAAAGGTGGTCACCTTGTTGTACCTTAGTCCGCCTTTATGCTAGGATGGGTCTTCATCGT 165 Query 265 TACAATTTGCTTCAGGGTAAGAATTTACAGCTCAATCGCGTAAAGAAATACAATATGAGT 324 ||||||||| || | ||| || | | || | | |||||||||||||||||||| Sbjct 166 TACAATTTG-TT--G---AAGC-TT-A--G-TCG-T-G--TAAAGAAATACAATATGAGT 210 Query 325 ACGCATTCTGCTGCTT 340 ||||||| |||||||| Sbjct 211 ACGCATTATGCTGCTT 226 > AT3G25080.1 | Symbols: | Protein of unknown function (DUF626) | chr3:9136631-9138052 FORWARD LENGTH=976 Length=976 Score = 113 bits (61), Expect = 2e-24 Identities = 196/258 (76%), Gaps = 22/258 (9%) Strand=Plus/Plus Query 228 CTTAGT-TATCCTTTATGCTAGGATGGGCCTTCATCGTTACAATTTGCTTCAGGGTA-AG 285 |||||| | | || ||||||| ||||||||||||||||||||||||||||||||| | Sbjct 165 CTTAGTCT-TACTCTATGCTACTCTGGGCCTTCATCGTTACAATTTGCTTCAGGGTACA- 222 Query 286 AA-TTTACAGCTCAATCGCGTAAAGAAATACAATATGAGTACGCATTCTGCTGCTTGCAA 344 || ||| |||||||||||||||||||| ||| | | ||| | ||||||| | | Sbjct 223 AAGTTT-CAGCTCAATCGCGTAAAGAAGTACGTTTTCTCAACGGGTGCTGCTGCCT-C-- 278 Query 345 TTACTACATTACTTTGGTTGCTATGGATCCTGCT-C-G-CAGCAAA-CTT---TT-AAA- 395 ||||||||| ||||||| ||| ||||| || ||| | | | | ||| || ||| Sbjct 279 TTACTACATAACTTTGGATGCAATGGAACCAGCTGCTGACTCCTCCTCTTCGCTTCAAAC 338 Query 396 -TTTCCAGACTAAAGTTGGTGAAGA-ACGGTTTGGCAAGTTTATTTTGACGTCCGATATT 453 |||| ||||| |||| ||||| | | |||||||| |||||| |||||| | ||||| Sbjct 339 CTTTC-AGACTGAAGTAACAGAAGATA-GTTTTGGCAAATTTATTCTGACGTGCAATATT 396 Query 454 GCTAGACCTCGAGGGGAA 471 || ||| |||||||||| Sbjct 397 GCAAGAATTCGAGGGGAA 414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37725844397 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5